C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ALX homeobox 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000329255 ALX4-001 ENSG00000052850 9606 - 11:44260444-44310166 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastHeartKidneyLungMuscleOvaryTestisENST00000329255
Transcript ID Adipose Adrenal Bladder Brain Breast Heart Kidney Lung Muscle Ovary Testis
ENST00000329255 0.070±0.00 0.029±0.00 0.031±0.00 0.098±0.04 0.319±0.29 0.037±0.02 0.011±0.00 0.038±0.02 0.045±0.00 0.027±0.01 0.246±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008UN CIL_0008UN_0001 VISTA 11:43968377-44572214
CIL_0002V3 CIL_0002V3_0002 CGP 11:44095549-44310166

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001501 NAS skeletal system development
GO:0001942 IMP hair follicle development
GO:0003677 NAS:IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IEA protein binding
GO:0005634 NAS nucleus
GO:0005667 IEA transcription factor complex
GO:0006351 IEA transcription, DNA-templated
GO:0006357 IEA regulation of transcription from RNA polymerase II promoter
GO:0007389 IEA pattern specification process
GO:0007517 IEA muscle organ development
GO:0009791 IEA post-embryonic development
GO:0009952 IEA anterior/posterior pattern specification
GO:0035108 IEA limb morphogenesis
GO:0035115 IEA embryonic forelimb morphogenesis
GO:0035116 IEA embryonic hindlimb morphogenesis
GO:0042733 IEA embryonic digit morphogenesis
GO:0042981 IEA regulation of apoptotic process
GO:0043565 IEA sequence-specific DNA binding
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0046982 IEA protein heterodimerization activity
GO:0048565 IEA digestive tract development
GO:0048704 IEA embryonic skeletal system morphogenesis
GO:0048705 IEA skeletal system morphogenesis
GO:0060021 IEA palate development
GO:0071837 IEA HMG box domain binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000042078 Alx4-001 protein_coding Mus_musculus 0 1282
ENSMUST00000111254 Alx4-002 protein_coding Mus_musculus 0 523
ENSDART00000002384 phox2a-001 protein_coding Danio_rerio 2e-21 110

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