C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: short chain dehydrogenase/reductase family 39U, member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000111325 Sdr39u1-201 ENSMUSG00000022223 10090 - 14:55897286-55900232 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000111325
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000111325 22.822±2.57 18.291±7.21 20.797±2.36 20.964±1.93 17.753±7.18 21.507±5.18 44.910±7.11 46.977±4.88 7.354±2.42 17.263±1.67 48.783±6.90 13.916±4.12 9.901±0.57 17.580±7.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004OB CIL_0004OB_0002 CGP 14:55884969-55900232
CIL_0004OA CIL_0004OA_0002 CGP 14:55897286-55944661

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005634 IEA nucleus
GO:0008150 ND biological_process
GO:0016491 IEA oxidoreductase activity
GO:0050662 IEA coenzyme binding
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000251343 KHNYN-002 protein_coding Homo_sapiens 0 206
ENST00000399390 SDR39U1-201 protein_coding Homo_sapiens 0 883
ENST00000399395 SDR39U1-001 protein_coding Homo_sapiens 0 926
ENST00000538105 SDR39U1-008 protein_coding Homo_sapiens 0 647
ENST00000544691 SDR39U1-003 retained_intron Homo_sapiens 0 891
ENST00000553343 SDR39U1-015 protein_coding Homo_sapiens 0 579
ENST00000553546 SDR39U1-020 retained_intron Homo_sapiens 0 647
ENST00000553930 SDR39U1-002 protein_coding Homo_sapiens 0 448
ENST00000554698 SDR39U1-007 protein_coding Homo_sapiens 0 645
ENST00000554947 SDR39U1-012 retained_intron Homo_sapiens 0 730
ENST00000555225 SDR39U1-021 protein_coding Homo_sapiens 0 776
ENST00000555355 SDR39U1-009 protein_coding Homo_sapiens 0 353
ENST00000555365 SDR39U1-018 protein_coding Homo_sapiens 0 726
ENST00000555561 SDR39U1-019 processed_transcript Homo_sapiens 0 202
ENST00000555778 SDR39U1-016 retained_intron Homo_sapiens 4e-35 152
ENST00000555830 SDR39U1-010 processed_transcript Homo_sapiens 0 200
ENST00000556175 SDR39U1-013 retained_intron Homo_sapiens 5.60519e-45 185
ENST00000556249 SDR39U1-017 protein_coding Homo_sapiens 0 558
ENST00000556262 SDR39U1-005 retained_intron Homo_sapiens 0 728
ENST00000556523 SDR39U1-022 protein_coding Homo_sapiens 0 520
ENST00000556548 SDR39U1-004 retained_intron Homo_sapiens 0 647
ENST00000556707 SDR39U1-006 retained_intron Homo_sapiens 0 645

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