C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000112027 Colq-001 ENSMUSG00000057606 10090 - 14:31523082-31577383 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonHeartLungMusclePlacentaENSMUST00000112027
Transcript ID Breast Colon Heart Lung Muscle Placenta
ENSMUST00000112027 5.337±0.58 1.568±0.17 4.341±1.15 8.181±2.29 3.094±0.47 2.077±1.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WP CIL_0007WP_0002 VISTA 14:30932335-31535522
CIL_0005AJ CIL_0005AJ_0002 CGP 14:31495079-31591343
CIL_0005AM CIL_0005AM_0002 CGP 14:31523082-31641286

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005581 IEA collagen trimer
GO:0030054 IEA cell junction
GO:0042135 IEA neurotransmitter catabolic process
GO:0045202 IEA synapse

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000383781 COLQ-003 protein_coding Homo_sapiens 0 1687
ENST00000383786 COLQ-007 protein_coding Homo_sapiens 0 1367
ENST00000383788 COLQ-001 protein_coding Homo_sapiens 0 1847
ENST00000603469 COLQ-005 processed_transcript Homo_sapiens 4e-22 108
ENST00000603808 COLQ-002 protein_coding Homo_sapiens 0 1751
ENST00000604401 COLQ-006 retained_intron Homo_sapiens 0 215
ENST00000605797 COLQ-004 protein_coding Homo_sapiens 0 634

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