C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: thymosin, beta 4, X chromosome
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000112172 Tmsb4x-001 ENSMUSG00000049775 10090 - X:167207093-167209315 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000112172
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000112172 316.604±63.90 1.166±0.28 2018.345±297.50 713.135±467.31 223.768±97.79 60.956±8.59 104.955±13.83 112.132±26.73 304.527±307.84 399.176±74.44 141.986±34.31 84.845±100.28 513.109±365.48 36.952±2.41

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001649 IEA osteoblast differentiation
GO:0003779 IEA actin binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005829 IDA cytosol
GO:0005856 IEA cytoskeleton
GO:0014911 TAS positive regulation of smooth muscle cell migration
GO:0030036 IEA actin cytoskeleton organization
GO:0030334 IDA regulation of cell migration
GO:0042989 IEA sequestering of actin monomers
GO:0045893 TAS positive regulation of transcription, DNA-templated
GO:0051152 TAS positive regulation of smooth muscle cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000284856 TMSB4Y-001 protein_coding Homo_sapiens 0 403
ENST00000323496 TMSB4XP4-001 processed_pseudogene Homo_sapiens 0 634
ENST00000335179 TMSB4XP2-001 unprocessed_pseudogene Homo_sapiens 0 215
ENST00000380633 TMSB4X-004 protein_coding Homo_sapiens 0 516
ENST00000380635 TMSB4X-001 protein_coding Homo_sapiens 0 617
ENST00000380636 TMSB4X-003 protein_coding Homo_sapiens 0 617
ENST00000402089 TMSB4XP8-001 processed_pseudogene Homo_sapiens 0 195
ENST00000415187 TMSB4XP6-001 processed_pseudogene Homo_sapiens 0 195
ENST00000424567 TMSB4XP1-001 processed_pseudogene Homo_sapiens 0 189
ENST00000451311 TMSB4X-002 protein_coding Homo_sapiens 0 623
ENST00000463943 BCAS4-005 nonsense_mediated_decay Homo_sapiens 0 342
ENST00000622974 TMSB4Y-201 protein_coding Homo_sapiens 1e-38 161

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