C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: REST corepressor 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000113369 Rcor2-201 ENSMUSG00000024968 10090 + 19:7269764-7275224 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000113369
Transcript ID Adrenal Bladder Brain Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000113369 0.552±0.17 2.091±0.03 10.544±5.09 0.361±0.00 1.393±0.35 0.214±0.06 0.311±0.32 0.235±0.03 0.206±0.05 1.732±0.60 5.705±5.87 0.745±0.36

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000785 IEA chromatin
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0003714 IDA transcription corepressor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005667 IDA transcription factor complex
GO:0006351 IEA transcription, DNA-templated
GO:0045892 IDA negative regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000104498 rcor3-201 protein_coding Danio_rerio 2.8026e-45 187
ENSDART00000143792 rcor3-001 protein_coding Danio_rerio 2.8026e-45 187
ENST00000301459 RCOR2-001 protein_coding Homo_sapiens 0 1893
ENST00000489217 RCOR2-003 retained_intron Homo_sapiens 0 472
ENST00000548294 RP11-74K11.1-001 processed_pseudogene Homo_sapiens 0 536

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