C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAB7, member RAS oncogene family
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000113600 Rab7-001 ENSMUSG00000079477 10090 - 6:87999106-88045270 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000113600
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000113600 95.005±9.08 99.462±15.03 135.020±35.88 69.688±20.41 67.335±22.46 87.626±13.74 69.577±9.88 141.965±13.78 81.181±8.66 121.477±12.98 91.206±12.81 67.743±29.94 59.653±34.97 14.762±6.96

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005764 ISO lysosome
GO:0005770 IDA late endosome
GO:0005794 IDA Golgi apparatus
GO:0006622 IEA protein targeting to lysosome
GO:0006886 TAS intracellular protein transport
GO:0007174 IEA epidermal growth factor catabolic process
GO:0007264 IEA small GTPase mediated signal transduction
GO:0008333 IEA endosome to lysosome transport
GO:0019003 IEA GDP binding
GO:0031410 IEA cytoplasmic vesicle
GO:0034045 IDA pre-autophagosomal structure membrane
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0045022 ISS early endosome to late endosome transport
GO:0045335 ISS phagocytic vesicle
GO:0045453 IEA bone resorption
GO:0048365 IEA Rac GTPase binding
GO:0070062 IEA extracellular vesicular exosome
GO:0090383 ISS phagosome acidification
GO:0090385 ISS phagosome-lysosome fusion
GO:0097208 IEA alveolar lamellar body
GO:2000785 IEA regulation of autophagic vacuole assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000123608 RAB7A (3 of 3)-202 protein_coding Danio_rerio 0 468
ENSDART00000113926 RAB7A (3 of 3)-201 protein_coding Danio_rerio 0 457
ENST00000265062 RAB7A-001 protein_coding Homo_sapiens 0 1821
ENST00000464496 RAB7A-006 protein_coding Homo_sapiens 0 627
ENST00000482525 RAB7A-004 protein_coding Homo_sapiens 0 987
ENST00000483906 RAB7A-011 protein_coding Homo_sapiens 0 379
ENST00000485280 RAB7A-012 protein_coding Homo_sapiens 0 241
ENST00000490093 RAB7A-009 protein_coding Homo_sapiens 0 388
ENST00000491681 RAB7A-007 retained_intron Homo_sapiens 0 243
ENST00000493186 RAB7A-010 protein_coding Homo_sapiens 0 231

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