C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 5 (sodium-dependent vitamin transporter), member 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000114668 Slc5a6-002 ENSMUSG00000006641 10090 - 5:31036036-31048562 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainMusclePlacentaTestisENSMUST00000114668
Transcript ID Brain Muscle Placenta Testis
ENSMUST00000114668 3.628±0.35 1.968±0.00 1.593±0.00 0.284±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000EJ CIL_0000EJ_0002 CGP 5:30968677-31048924
CIL_0000EI CIL_0000EI_0002 CGP 5:31036036-31054633

Gene Ontology

GO IDEvidence TypeGO Description
GO:0006814 IEA sodium ion transport
GO:0008523 IEA sodium-dependent multivitamin transmembrane transporter activity
GO:0012506 IEA vesicle membrane
GO:0015878 IEA biotin transport
GO:0015887 IEA pantothenate transmembrane transport
GO:0016021 IEA integral component of membrane
GO:0031526 IEA brush border membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000310574 SLC5A6-001 protein_coding Homo_sapiens 0 1775
ENST00000401463 SLC5A6-006 protein_coding Homo_sapiens 0 448
ENST00000408041 SLC5A6-003 protein_coding Homo_sapiens 0 1777
ENST00000412471 SLC5A6-004 protein_coding Homo_sapiens 0 595
ENST00000426119 SLC5A6-007 protein_coding Homo_sapiens 0 355
ENST00000432106 SLC5A6-009 protein_coding Homo_sapiens 0 422
ENST00000445802 SLC5A6-008 nonsense_mediated_decay Homo_sapiens 0 481
ENST00000464538 SLC5A6-013 retained_intron Homo_sapiens 0 237
ENST00000488743 SLC5A6-002 retained_intron Homo_sapiens 0 1229

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