C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted pseudogene 5566
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000116118 Gm5566-001 ENSMUSG00000080002 10090 - 5:149660765-149661223 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000116118
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000116118 0.249±0.02 0.054±0.03 0.052±0.00 0.211±0.09 0.169±0.02 0.225±0.11 0.104±0.00 0.091±0.07 0.134±0.01 0.443±0.21 0.368±0.13 0.234±0.09 0.327±0.27

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000PA CIL_0000PA_0003 CGP 5:149614287-149762599

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000376392 NME2-003 protein_coding Homo_sapiens 0 302
ENST00000393183 NME1-NME2-201 protein_coding Homo_sapiens 0 302
ENST00000393190 NME1-NME2-005 protein_coding Homo_sapiens 0 586
ENST00000393193 NME2-001 protein_coding Homo_sapiens 0 586
ENST00000426182 NME2P1-001 processed_pseudogene Homo_sapiens 0 507
ENST00000449172 RP11-92C4.4-001 processed_pseudogene Homo_sapiens 0 226
ENST00000503064 NME1-NME2-002 protein_coding Homo_sapiens 0 586
ENST00000512737 NME1-NME2-001 protein_coding Homo_sapiens 0 586
ENST00000513177 NME1-NME2-004 protein_coding Homo_sapiens 0 586
ENST00000514264 NME1-NME2-003 protein_coding Homo_sapiens 0 586
ENST00000555572 NME2-002 protein_coding Homo_sapiens 0 586
ENST00000570801 NME1-NME2-008 retained_intron Homo_sapiens 0 436
ENST00000573262 NME1-NME2-009 retained_intron Homo_sapiens 0 289

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