C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000PA_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000019874-ENSDARG00000073917 CGP 7955 15:30861689-30979104
GeneTranscriptPositionBiotype
ENSDARG00000019874 (hsph1)
heat shock 105/110 protein 1 		ENSDART00000005120 (hsph1-201) 30862449-30885432 protein_coding
ENSDART00000153598 (hsph1-001) 30861689-30885714 protein_coding
ENSDART00000155806 (hsph1-002) 30882950-30885541 retained_intron
ENSDARG00000073917 (b3galtla)
beta 1,3-galactosyltransferase-like a 		ENSDART00000113370 (b3galtla-001) 30948085-30979104 protein_coding
ENSDARG00000086234 (CABZ01017915.1)
 ENSDART00000123857 (CABZ01017915.1-201) 30932420-30932515 miRNA

Danio rerio Ensembl (Zv9)

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CIL_0000PA_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000120694-ENSG00000187676 CGP 9606 13:31134974-31332276
GeneTranscriptPositionBiotype
ENSG00000120694 (HSPH1)
heat shock 105kDa/110kDa protein 1 		ENST00000320027 (HSPH1-001) 31135049-31161927 protein_coding
ENST00000380405 (HSPH1-002) 31136628-31161927 protein_coding
ENST00000435381 (HSPH1-004) 31136625-31138568 protein_coding
ENST00000445273 (HSPH1-201) 31134974-31162388 protein_coding
ENST00000469538 (HSPH1-005) 31138539-31139182 retained_intron
ENST00000602786 (HSPH1-003) 31136628-31161927 nonsense_mediated_decay
ENSG00000187676 (B3GALTL)
beta 1,3-galactosyltransferase-like 		ENST00000343307 (B3GALTL-001) 31199936-31332276 protein_coding
ENST00000461652 (B3GALTL-002) 31260407-31284755 processed_transcript
ENSG00000229427 (ANKRD26P4)
ankyrin repeat domain 26 pseudogene 4 		ENST00000455755 (ANKRD26P4-001) 31311289-31312921 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_0000PA_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000029657-ENSMUSG00000051950 CGP 10090 5:149614287-149762599
GeneTranscriptPositionBiotype
ENSMUSG00000029657 (Hsph1)
heat shock 105kDa/110kDa protein 1 		ENSMUST00000074846 (Hsph1-001) 149616544-149636338 protein_coding
ENSMUST00000076410 (Hsph1-006) 149614287-149636171 protein_coding
ENSMUST00000110498 (Hsph1-002) 149617169-149636338 protein_coding
ENSMUST00000127977 (Hsph1-004) 149632039-149636351 protein_coding
ENSMUST00000132412 (Hsph1-005) 149629984-149636376 protein_coding
ENSMUST00000137534 (Hsph1-003) 149620682-149636338 retained_intron
ENSMUSG00000051950 (B3glct)
beta-3-glucosyltransferase 		ENSMUST00000100404 (B3glct-001) 149678230-149762599 protein_coding
ENSMUST00000159581 (B3glct-002) 149753942-149760607 retained_intron
ENSMUST00000161388 (B3glct-003) 149739532-149751135 processed_transcript
ENSMUSG00000080002 (Gm5566)
predicted pseudogene 5566 		ENSMUST00000116118 (Gm5566-001) 149660765-149661223 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000PA_0001ENSDARG00000019874ENSDART00000005120ENSDART00000153598ENSDART00000155806ENSDARG00000073917ENSDART00000113370ENSDARG00000086234ENSDART00000123857CIL_0000PA_0002ENSG00000120694ENST00000320027ENST00000380405ENST00000435381ENST00000445273ENST00000469538ENST00000602786ENSG00000187676ENST00000343307ENST00000461652ENSG00000229427ENST00000455755CIL_0000PA_0003ENSMUSG00000029657ENSMUST00000074846ENSMUST00000076410ENSMUST00000110498ENSMUST00000127977ENSMUST00000132412ENSMUST00000137534ENSMUSG00000051950ENSMUST00000100404ENSMUST00000159581ENSMUST00000161388ENSMUSG00000080002ENSMUST00000116118
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000PA_0001ENSDARG00000019874ENSDART00000005120ENSDART00000153598ENSDART00000155806ENSDARG00000073917ENSDART00000113370ENSDARG00000086234ENSDART00000123857CIL_0000PA_0002ENSG00000120694ENST00000320027ENST00000380405ENST00000435381ENST00000445273ENST00000602786ENSG00000187676ENST00000343307ENSG00000229427ENST00000455755CIL_0000PA_0003ENSMUSG00000029657ENSMUST00000074846ENSMUST00000076410ENSMUST00000110498ENSMUST00000127977ENSMUST00000137534ENSMUSG00000051950ENSMUST00000100404ENSMUST00000159581ENSMUSG00000080002ENSMUST00000116118
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000019874 ENSDART00000005120 N/A N/A N/A N/A N/A N/A 0.991±0.00 N/A 0.021±0.00 N/A N/A N/A N/A N/A
ENSDART00000153598 N/A N/A N/A 2.700±0.00 N/A N/A 2.457±1.24 0.632±0.45 0.051±0.00 N/A 1.905±0.00 N/A N/A N/A
ENSDART00000155806 N/A N/A N/A N/A N/A N/A N/A N/A 0.147±0.00 N/A N/A N/A N/A N/A
ENSDARG00000073917 ENSDART00000113370 N/A N/A N/A 11.400±0.38 N/A N/A 15.116±14.22 2.032±1.61 0.044±0.00 N/A 0.979±0.00 N/A N/A N/A
ENSDARG00000086234 ENSDART00000123857 N/A N/A N/A 64.098±0.00 N/A N/A 4.885±0.00 N/A N/A N/A 9.657±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000120694 ENST00000320027 N/A N/A N/A 3.022±0.26 1.999±0.92 0.777±0.00 N/A N/A 0.439±0.00 N/A 0.264±0.00 2.462±0.46 N/A N/A
ENST00000380405 3.444±0.00 2.268±0.00 N/A 11.200±3.12 5.898±2.71 17.765±14.66 1.973±0.90 7.484±5.86 2.232±0.99 10.469±2.88 2.509±0.56 11.518±6.72 5.634±0.00 27.883±1.87
ENST00000435381 N/A N/A N/A N/A 6.129±0.00 N/A N/A N/A 2.381±0.00 15.154±0.00 N/A 28.770±17.95 8.930±0.00 41.564±0.00
ENST00000445273 N/A N/A 0.354±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 1.945±0.00 N/A N/A
ENST00000469538 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000602786 3.442±0.00 4.076±0.00 2.675±0.00 9.365±0.00 N/A 11.437±8.62 1.666±0.71 2.746±0.00 2.849±0.15 N/A 2.285±0.00 8.628±4.05 4.025±1.02 35.905±0.00
ENSG00000187676 ENST00000343307 2.019±0.00 2.081±0.00 0.836±0.00 2.647±1.28 0.948±0.15 1.276±0.23 3.590±3.18 1.600±1.11 0.766±0.03 0.897±0.00 0.470±0.25 1.977±1.34 1.162±0.16 1.881±1.67
ENST00000461652 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000229427 ENST00000455755 0.036±0.00 0.054±0.00 0.120±0.00 0.064±0.04 0.136±0.08 N/A 0.067±0.02 0.279±0.00 0.033±0.00 N/A N/A 0.090±0.06 N/A 0.144±0.04
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029657 ENSMUST00000074846 5.577±2.18 2.897±1.08 10.990±1.44 26.480±2.78 2.707±0.27 2.453±0.87 5.591±0.33 12.157±2.31 9.741±7.27 2.833±0.27 10.363±1.14 8.744±5.80 30.556±11.29 4.273±1.22
ENSMUST00000076410 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.882±0.00
ENSMUST00000110498 2.721±1.80 5.656±1.47 2.840±0.24 4.391±0.00 1.381±0.35 2.942±1.56 N/A 4.112±0.00 3.336±1.71 1.728±0.15 2.465±0.52 12.589±5.80 12.097±8.14 2.618±1.07
ENSMUST00000127977 N/A 12.085±4.66 N/A N/A 6.763±1.83 N/A N/A N/A N/A 4.156±0.00 N/A 18.653±2.85 N/A N/A
ENSMUST00000132412 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000137534 1.841±0.04 2.696±0.77 N/A N/A 0.972±0.21 0.858±0.11 N/A 1.537±0.03 1.097±0.10 1.103±0.50 N/A 4.277±0.81 N/A 1.073±0.20
ENSMUSG00000051950 ENSMUST00000100404 9.014±1.01 8.122±1.33 3.798±0.39 4.046±2.23 6.147±1.16 4.025±0.55 2.004±0.37 3.497±0.24 1.451±1.04 3.395±0.23 0.429±0.12 8.480±2.70 1.350±0.86 0.420±0.18
ENSMUST00000159581 N/A 4.307±0.56 N/A N/A N/A 1.968±0.23 N/A N/A 0.292±0.00 N/A 0.336±0.00 N/A 0.914±0.36 N/A
ENSMUST00000161388 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000080002 ENSMUST00000116118 0.249±0.02 N/A 0.054±0.03 0.052±0.00 0.211±0.09 0.169±0.02 0.225±0.11 0.104±0.00 0.091±0.07 0.134±0.01 0.443±0.21 0.368±0.13 0.234±0.09 0.327±0.27

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