C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transformation related protein 53 binding protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000117245 Trp53bp2-001 ENSMUSG00000026510 10090 + 1:182409172-182462432 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000117245
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000117245 3.877±1.19 3.070±1.27 4.560±0.54 8.713±1.55 4.241±1.00 6.558±1.08 1.967±0.19 11.334±0.27 2.081±0.58 14.840±2.74 2.009±0.66 8.126±4.37 7.201±2.66 1.611±0.91

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007R5 CIL_0007R5_0002 VISTA 1:181809962-182412053

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 ISS nucleus
GO:0005737 ISS cytoplasm
GO:0007049 IEA cell cycle
GO:0007417 IMP central nervous system development
GO:0007507 IMP heart development
GO:0009792 IGI embryo development ending in birth or egg hatching
GO:0010212 IMP response to ionizing radiation
GO:0017124 IEA SH3 domain binding
GO:0042802 IEA identical protein binding
GO:0048471 IEA perinuclear region of cytoplasm
GO:0051059 IEA NF-kappaB binding
GO:0072332 ISS intrinsic apoptotic signaling pathway by p53 class mediator

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000006892 tp53bp2-001 protein_coding Danio_rerio 0 390
ENST00000343537 TP53BP2-001 protein_coding Homo_sapiens 0 3825
ENST00000391878 TP53BP2-002 protein_coding Homo_sapiens 0 3563
ENST00000464172 TP53BP2-011 retained_intron Homo_sapiens 0 276
ENST00000464656 TP53BP2-014 nonsense_mediated_decay Homo_sapiens 1.99965e-42 176
ENST00000481128 TP53BP2-006 processed_transcript Homo_sapiens 0 545
ENST00000483398 TP53BP2-007 nonsense_mediated_decay Homo_sapiens 0 1744
ENST00000489310 TP53BP2-013 processed_transcript Homo_sapiens 0 457
ENST00000498843 TP53BP2-005 processed_transcript Homo_sapiens 0 2630

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