C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cyclin D3, pseudogene
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000117963 Ccnd3-ps-001 ENSMUSG00000080708 10090 - 4:139345300-139346180 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonLiverLungMuscleOvaryPlacentaTestisENSMUST00000117963
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000117963 0.085±0.07 0.061±0.00 0.036±0.00 0.108±0.02 0.052±0.01 0.054±0.00 0.034±0.01 0.113±0.00 0.168±0.00 0.112±0.00 1.471±2.14 0.076±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003WO CIL_0003WO_0002 CGP 4:139310744-139352576

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000372987 CCND3-002 protein_coding Homo_sapiens 0 808
ENST00000372988 CCND3-006 protein_coding Homo_sapiens 0 813
ENST00000372991 CCND3-001 protein_coding Homo_sapiens 0 1050
ENST00000414200 CCND3-003 protein_coding Homo_sapiens 0 584
ENST00000415497 CCND3-007 protein_coding Homo_sapiens 0 584
ENST00000438347 CCND3P1-001 processed_pseudogene Homo_sapiens 0 339
ENST00000505064 CCND3-014 protein_coding Homo_sapiens 0 464
ENST00000505672 CCND3-008 retained_intron Homo_sapiens 0 444
ENST00000505884 CCND3-010 retained_intron Homo_sapiens 0 217
ENST00000506555 CCND3-015 processed_transcript Homo_sapiens 0 268
ENST00000508143 CCND3-011 protein_coding Homo_sapiens 0 265
ENST00000510058 CCND3-004 retained_intron Homo_sapiens 0 246
ENST00000510503 CCND3-020 protein_coding Homo_sapiens 0 444
ENST00000511161 CCND3-016 retained_intron Homo_sapiens 0 215
ENST00000511642 CCND3-005 protein_coding Homo_sapiens 0 811
ENST00000511686 CCND3-021 processed_transcript Homo_sapiens 0 215
ENST00000512426 CCND3-019 protein_coding Homo_sapiens 0 603
ENST00000513956 CCND3-018 processed_transcript Homo_sapiens 0 381
ENST00000616010 CCND3-201 protein_coding Homo_sapiens 0 586

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