C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RIKEN cDNA 2900011O08 gene
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000118412 2900011O08Rik-002 ENSMUSG00000044117 10090 + 16:13986657-14100228 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainColonHeartLiverOvaryPlacentaTestisENSMUST00000118412
Transcript ID Adrenal Brain Colon Heart Liver Ovary Placenta Testis
ENSMUST00000118412 0.719±0.18 55.489±0.00 0.310±0.12 0.062±0.03 0.111±0.00 0.198±0.09 0.045±0.02 3.515±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006UU CIL_0006UU_0002 CGP 16:13986604-14159274

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0007026 IMP negative regulation of microtubule depolymerization
GO:0015630 IDA microtubule cytoskeleton
GO:0021822 IMP negative regulation of cell motility involved in cerebral cortex radial glia guided migration

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000300006 C16orf45-001 protein_coding Homo_sapiens 0 544
ENST00000452191 C16orf45-002 protein_coding Homo_sapiens 0 544
ENST00000561692 C16orf45-010 protein_coding Homo_sapiens 0 235
ENST00000561813 C16orf45-007 nonsense_mediated_decay Homo_sapiens 2e-28 130
ENST00000564389 C16orf45-009 protein_coding Homo_sapiens 0 279
ENST00000565857 C16orf45-013 protein_coding Homo_sapiens 1e-28 130
ENST00000565913 C16orf45-012 processed_transcript Homo_sapiens 0 544
ENST00000566490 C16orf45-004 protein_coding Homo_sapiens 0 433
ENST00000567550 C16orf45-011 retained_intron Homo_sapiens 0 414
ENST00000570249 C16orf45-006 nonsense_mediated_decay Homo_sapiens 0 279
ENST00000610499 C16orf45-201 protein_coding Homo_sapiens 0 544
ENST00000615273 C16orf45-202 protein_coding Homo_sapiens 0 544

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