C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: thymoma viral proto-oncogene 1 interacting protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000120349 Aktip-001 ENSMUSG00000031667 10090 - 8:91123499-91134465 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; MuscleENSMUST00000120349
Transcript ID Muscle
ENSMUST00000120349 13.996±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ON CIL_0007ON_0003 UCNEbase 8:88447800-92743752
CIL_0007PV CIL_0007PV_0002 VISTA 8:90870647-91472060
CIL_0008IZ CIL_0008IZ_0002 VISTA 8:90885299-91486231
CIL_0007S1 CIL_0007S1_0002 VISTA 8:91005057-91606285
CIL_0007S0 CIL_0007S0_0002 VISTA 8:91042027-91642872
CIL_0005OB CIL_0005OB_0002 CGP 8:91070057-91134465
CIL_0005OC CIL_0005OC_0002 CGP 8:91112041-91313262

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001934 ISA positive regulation of protein phosphorylation
GO:0005515 IEA protein binding
GO:0005886 ISA plasma membrane
GO:0006915 IEA apoptotic process
GO:0007032 ISS endosome organization
GO:0007040 ISS lysosome organization
GO:0008152 IEA metabolic process
GO:0008333 ISS endosome to lysosome transport
GO:0015031 IEA protein transport
GO:0016881 IEA acid-amino acid ligase activity
GO:0030897 IEA HOPS complex
GO:0032092 ISA positive regulation of protein binding
GO:0045022 ISS early endosome to late endosome transport
GO:0070695 ISS FHF complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000262133 RBL2-001 protein_coding Homo_sapiens 0 191
ENST00000300245 AKTIP-003 protein_coding Homo_sapiens 0 1452
ENST00000379935 RBL2-010 processed_transcript Homo_sapiens 0 191
ENST00000394657 AKTIP-001 protein_coding Homo_sapiens 0 1461
ENST00000514047 CTD-2015B23.2-001 processed_pseudogene Homo_sapiens 0 1038
ENST00000544545 RBL2-201 protein_coding Homo_sapiens 0 191
ENST00000563108 AKTIP-004 retained_intron Homo_sapiens 0 556
ENST00000563928 AKTIP-010 protein_coding Homo_sapiens 0 595
ENST00000565408 AKTIP-008 protein_coding Homo_sapiens 0 549
ENST00000565431 AKTIP-014 retained_intron Homo_sapiens 0 551
ENST00000568022 AKTIP-006 protein_coding Homo_sapiens 0 556
ENST00000568596 AKTIP-007 protein_coding Homo_sapiens 0 518
ENST00000570004 AKTIP-002 protein_coding Homo_sapiens 0 1304
ENST00000571523 AKTIP-015 retained_intron Homo_sapiens 0 475
ENST00000603353 RP5-966M1.4-001 processed_pseudogene Homo_sapiens 0 599

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