C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: retinoblastoma-like 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000262133 RBL2-001 ENSG00000103479 9606 + 16:53434420-53491649 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000262133
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000262133 4.794±0.00 3.607±0.00 5.534±0.00 5.046±0.00 1.564±0.00 4.298±0.00 6.881±0.00 2.984±0.00 2.485±0.00 3.640±0.97 3.422±0.36 7.334±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ON CIL_0007ON_0002 UCNEbase 16:51906374-55391377
CIL_0007PV CIL_0007PV_0001 VISTA 16:53229142-53830543
CIL_0008IZ CIL_0008IZ_0001 VISTA 16:53244122-53845073
CIL_0007S1 CIL_0007S1_0001 VISTA 16:53392404-53993644
CIL_0007S0 CIL_0007S0_0001 VISTA 16:53426386-54027245
CIL_0005OB CIL_0005OB_0001 CGP 16:53433977-53504411

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000278 TAS mitotic cell cycle
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0005667 IEA transcription factor complex
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006357 IEA regulation of transcription from RNA polymerase II promoter
GO:0007049 IEA cell cycle
GO:0016568 IEA chromatin modification
GO:0043550 IDA regulation of lipid kinase activity
GO:0051726 IEA regulation of cell cycle
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000034091 Rbl2-001 protein_coding Mus_musculus 0 3923
ENSMUST00000144190 Rbl2-003 retained_intron Mus_musculus 0 832
ENSMUST00000141351 Rbl2-002 retained_intron Mus_musculus 0 817
ENSMUST00000147361 Rbl2-005 retained_intron Mus_musculus 0 608
ENSMUST00000145246 Rbl2-004 processed_transcript Mus_musculus 0 475
ENSMUST00000130336 Rbl2-006 retained_intron Mus_musculus 0 440
ENSMUST00000126689 Rbl2-007 retained_intron Mus_musculus 0 291
ENSMUST00000120213 Aktip-005 protein_coding Mus_musculus 0 191
ENSMUST00000120349 Aktip-001 protein_coding Mus_musculus 0 191

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