C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: predicted gene 5405
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000120478 Gm5405-001 ENSMUSG00000083903 10090 - 16:32591301-32591909 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainPlacentaENSMUST00000120478
Transcript ID Brain Placenta
ENSMUST00000120478 0.031±0.00 0.055±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008QR CIL_0008QR_0002 VISTA 16:32268412-32870796

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000219315 SETD6-003 protein_coding Homo_sapiens 0 505
ENST00000310682 SETD6-001 protein_coding Homo_sapiens 0 505
ENST00000394266 SETD6-006 protein_coding Homo_sapiens 0 505
ENST00000418480 SETD6-010 processed_transcript Homo_sapiens 2e-38 163
ENST00000422445 SETD6-004 nonsense_mediated_decay Homo_sapiens 5e-38 163
ENST00000427443 SETD6-002 nonsense_mediated_decay Homo_sapiens 2e-37 161
ENST00000467320 SETD6-011 retained_intron Homo_sapiens 9e-38 161

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