C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 6640
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000120629 Gm6640-001 ENSMUSG00000083681 10090 - 16:23717169-23718755 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; TestisENSMUST00000120629
Transcript ID Testis
ENSMUST00000120629 0.036±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000046 CIL_000046_0002 CGP 16:23609919-23890844

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000296577 ABCE1-001 protein_coding Homo_sapiens 0 1938
ENST00000422071 RP11-142L4.2-001 processed_pseudogene Homo_sapiens 0 542
ENST00000431492 RP11-142L4.3-001 processed_pseudogene Homo_sapiens 0 597
ENST00000444025 AC006026.9-001 processed_pseudogene Homo_sapiens 0 1701
ENST00000455611 OTUD4-009 processed_transcript Homo_sapiens 9e-32 143
ENST00000502586 ABCE1-004 protein_coding Homo_sapiens 0 817
ENST00000502803 ABCE1-006 processed_transcript Homo_sapiens 0 597
ENST00000504292 ABCE1-005 nonsense_mediated_decay Homo_sapiens 0 267
ENST00000507193 ABCE1-010 nonsense_mediated_decay Homo_sapiens 0 1589
ENST00000509593 ABCE1-009 retained_intron Homo_sapiens 0 333
ENST00000510321 ABCE1-002 retained_intron Homo_sapiens 8e-18 97
ENST00000515678 ABCE1-008 retained_intron Homo_sapiens 0 512

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