C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: mitochondrial ribosomal protein L48 pseudogene
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000121413 Mrpl48-ps-001 ENSMUSG00000078480 10090 - 4:88599175-88599810 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000121413
Transcript ID Adipose Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000121413 0.678±0.37 6.438±6.23 0.594±0.07 0.382±0.20 0.737±0.45 0.637±0.20 0.214±0.16 0.235±0.01 0.603±0.43 4.081±4.31 2.283±3.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00056K CIL_00056K_000G CGP 4:88591813-88603376

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000310614 MRPL48-001 protein_coding Homo_sapiens 0 638
ENST00000314282 MRPL48-006 protein_coding Homo_sapiens 0 512
ENST00000398483 MRPL48-005 protein_coding Homo_sapiens 0 555
ENST00000411840 MRPL48-004 protein_coding Homo_sapiens 0 614
ENST00000497094 MRPL48-009 protein_coding Homo_sapiens 1e-38 163
ENST00000508278 MRPL48-002 nonsense_mediated_decay Homo_sapiens 0 555
ENST00000535277 MRPL48-010 protein_coding Homo_sapiens 0 300
ENST00000537007 MRPL48-012 protein_coding Homo_sapiens 0 207
ENST00000540162 MRPL48-007 nonsense_mediated_decay Homo_sapiens 0 555
ENST00000543058 MRPL48-013 nonsense_mediated_decay Homo_sapiens 0 196
ENST00000543374 MRPL48-014 retained_intron Homo_sapiens 0 259
ENST00000544140 MRPL48-003 nonsense_mediated_decay Homo_sapiens 0 351
ENST00000544819 MRPL48-008 nonsense_mediated_decay Homo_sapiens 0 555

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