C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: achaete-scute complex homolog 2 (Drosophila)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000121862 Ascl2-001 ENSMUSG00000009248 10090 - 7:142966829-142969264 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000121862
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000121862 0.480±0.25 0.558±0.17 0.766±0.00 0.078±0.00 0.302±0.16 2.397±0.98 0.028±0.01 0.081±0.03 0.124±0.18 0.257±0.07 0.036±0.00 0.378±0.20 24.574±21.95 0.315±0.26

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009BT CIL_0009BT_0002 VISTA 7:142749845-143351046
CIL_0008VI CIL_0008VI_0002 VISTA 7:142812060-143412968
CIL_0008FP CIL_0008FP_0002 VISTA 7:142853813-143455333
CIL_00048H CIL_00048H_0002 CGP 7:142892752-142969264
CIL_0008A3 CIL_0008A3_0002 VISTA 7:142895498-143499796

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001701 IMP in utero embryonic development
GO:0001890 IMP placenta development
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006357 IDA regulation of transcription from RNA polymerase II promoter
GO:0030154 IMP cell differentiation
GO:0035019 IMP somatic stem cell maintenance
GO:0043565 IDA sequence-specific DNA binding
GO:0046983 IEA protein dimerization activity
GO:0060708 IMP spongiotrophoblast differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000331289 ASCL2-001 protein_coding Homo_sapiens 0 379

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