C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: achaete-scute family bHLH transcription factor 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000331289 ASCL2-001 ENSG00000183734 9606 - 11:2268495-2270952 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000331289
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000331289 0.255±0.00 0.420±0.00 0.269±0.00 0.510±0.08 1.355±0.13 0.324±0.00 0.908±0.44 0.448±0.14 1.512±0.00 0.070±0.00 31.132±38.72 41.388±15.04 1.702±0.29

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RG CIL_0007RG_0001 VISTA 11:1668349-2271510
CIL_00097V CIL_00097V_0001 VISTA 11:1688064-2293510
CIL_0009BT CIL_0009BT_0001 VISTA 11:2074187-2675527
CIL_0008VI CIL_0008VI_0001 VISTA 11:2150916-2751083
CIL_00048H CIL_00048H_0001 CGP 11:2163929-2270952
CIL_0008FP CIL_0008FP_0001 VISTA 11:2232763-2834370

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0001666 IEP response to hypoxia
GO:0001701 IEA in utero embryonic development
GO:0001890 NAS placenta development
GO:0003700 NAS sequence-specific DNA binding transcription factor activity
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006351 IDA transcription, DNA-templated
GO:0006355 NAS regulation of transcription, DNA-templated
GO:0006357 IEA regulation of transcription from RNA polymerase II promoter
GO:0010626 IEA negative regulation of Schwann cell proliferation
GO:0030154 IEA cell differentiation
GO:0035019 IEA somatic stem cell maintenance
GO:0043565 IEA sequence-specific DNA binding
GO:0046983 IEA protein dimerization activity
GO:0060708 IEA spongiotrophoblast differentiation
GO:0060712 IEP spongiotrophoblast layer development
GO:0070888 IDA E-box binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000009392 Ascl2-201 protein_coding Mus_musculus 0 379
ENSMUST00000121862 Ascl2-001 protein_coding Mus_musculus 0 379

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