C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: asparagine-linked glycosylation 3 (alpha-1,3-mannosyltransferase)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000123774 Alg3-002 ENSMUSG00000033809 10090 - 16:20605473-20610747 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000123774
Transcript ID Adipose Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000123774 1.758±0.51 1.459±0.12 1.866±0.92 2.619±0.54 0.900±0.21 1.376±0.18 1.543±0.68 1.994±0.49 1.454±0.42 3.387±1.50 3.014±2.25 1.226±0.64

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005FO CIL_0005FO_0002 CGP 16:20589471-20610768
CIL_000573 CIL_000573_0002 CGP 16:20605451-20646485

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005783 IEA endoplasmic reticulum
GO:0008152 IEA metabolic process
GO:0016021 IEA integral component of membrane
GO:0016758 IEA transferase activity, transferring hexosyl groups

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000397676 ALG3-001 protein_coding Homo_sapiens 0 1168
ENST00000411922 ALG3-004 nonsense_mediated_decay Homo_sapiens 0 1376
ENST00000414845 ALG3-013 nonsense_mediated_decay Homo_sapiens 0 564
ENST00000423996 ALG3-007 nonsense_mediated_decay Homo_sapiens 0 713
ENST00000445626 ALG3-002 protein_coding Homo_sapiens 0 1168
ENST00000446569 ALG3-014 protein_coding Homo_sapiens 0 990
ENST00000455059 ALG3-003 protein_coding Homo_sapiens 0 1168
ENST00000461415 ALG3-006 retained_intron Homo_sapiens 0 331
ENST00000462735 ALG3-010 retained_intron Homo_sapiens 0 464
ENST00000477959 ALG3-009 retained_intron Homo_sapiens 0 307
ENST00000482048 ALG3-008 retained_intron Homo_sapiens 0 331
ENST00000485912 ALG3-012 retained_intron Homo_sapiens 0 381
ENST00000488976 ALG3-005 retained_intron Homo_sapiens 0 331
ENST00000508806 ALG3P1-001 processed_pseudogene Homo_sapiens 0 845

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