C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: translocated promoter region, nuclear basket protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000124973 Tpr-002 ENSMUSG00000006005 10090 + 1:150392838-150449815 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000124973
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000124973 2.929±0.55 3.553±0.00 5.164±1.25 11.913±10.50 3.696±0.42 1.883±0.07 3.658±0.97 1.692±0.24 5.056±2.82 3.100±0.14 5.936±0.67 14.436±14.74 23.271±17.50 6.329±4.67

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 ISS negative regulation of transcription from RNA polymerase II promoter
GO:0000189 ISS MAPK import into nucleus
GO:0000776 ISS kinetochore
GO:0003682 ISS chromatin binding
GO:0003729 ISS mRNA binding
GO:0005487 ISS nucleocytoplasmic transporter activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005635 IDA nuclear envelope
GO:0005643 ISS nuclear pore
GO:0005737 ISS cytoplasm
GO:0005868 ISS cytoplasmic dynein complex
GO:0006404 ISS RNA import into nucleus
GO:0006405 ISS RNA export from nucleus
GO:0006999 ISS nuclear pore organization
GO:0007067 IEA mitotic nuclear division
GO:0007094 ISS mitotic spindle assembly checkpoint
GO:0010965 ISS regulation of mitotic sister chromatid separation
GO:0015631 IEA tubulin binding
GO:0019898 ISS extrinsic component of membrane
GO:0031072 ISS heat shock protein binding
GO:0031453 ISS positive regulation of heterochromatin assembly
GO:0031965 ISS nuclear membrane
GO:0031990 ISS mRNA export from nucleus in response to heat stress
GO:0034399 ISS nuclear periphery
GO:0034605 ISS cellular response to heat
GO:0035457 IDA cellular response to interferon-alpha
GO:0042307 ISS positive regulation of protein import into nucleus
GO:0042405 ISS nuclear inclusion body
GO:0042803 ISS protein homodimerization activity
GO:0044615 ISS nuclear pore nuclear basket
GO:0044822 IEA poly(A) RNA binding
GO:0045947 ISS negative regulation of translational initiation
GO:0046827 ISS positive regulation of protein export from nucleus
GO:0046832 ISS negative regulation of RNA export from nucleus
GO:0051019 ISS mitogen-activated protein kinase binding
GO:0070840 IEA dynein complex binding
GO:0070849 ISS response to epidermal growth factor
GO:0072686 ISS mitotic spindle
GO:0090267 ISS positive regulation of mitotic cell cycle spindle assembly checkpoint
GO:0090316 ISS positive regulation of intracellular protein transport
GO:1901673 ISS regulation of spindle assembly involved in mitosis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000367478 TPR-001 protein_coding Homo_sapiens 0 8517
ENST00000451586 TPR-003 protein_coding Homo_sapiens 0 377
ENST00000467810 TPR-008 processed_transcript Homo_sapiens 0 634
ENST00000469463 TPR-005 retained_intron Homo_sapiens 0 399
ENST00000474852 TPR-002 processed_transcript Homo_sapiens 0 2815
ENST00000481347 TPR-006 retained_intron Homo_sapiens 0 540
ENST00000491783 TPR-004 retained_intron Homo_sapiens 0 968
ENST00000492973 TPR-007 retained_intron Homo_sapiens 0 331
ENST00000613151 TPR-201 protein_coding Homo_sapiens 0 2603

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