C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TMF1-regulated nuclear protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000125541 Trnp1-001 ENSMUSG00000056596 10090 - 4:133491100-133498550 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000125541
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000125541 0.856±0.42 2.716±0.97 15.727±4.49 8.745±9.17 0.808±0.31 6.154±0.99 0.883±0.20 0.287±0.11 0.074±0.10 1.388±0.25 0.264±0.06 0.766±0.29 0.604±0.66 0.434±0.21

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007T4 CIL_0007T4_0002 VISTA 4:133429051-134030305

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IDA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005719 IDA nuclear euchromatin
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007049 IEA cell cycle
GO:0021696 IMP cerebellar cortex morphogenesis
GO:0042127 IMP regulation of cell proliferation
GO:0051726 IMP regulation of cell cycle
GO:0061351 IMP neural precursor cell proliferation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000522111 TRNP1-001 protein_coding Homo_sapiens 0 704

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