C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TMF1-regulated nuclear protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000522111 TRNP1-001 ENSG00000253368 9606 + 1:26993707-27000898 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000522111
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000522111 1.639±0.00 3.579±0.00 0.212±0.00 10.030±6.13 1.037±0.90 3.384±3.10 3.823±3.28 14.132±0.00 1.349±1.19 4.393±4.24 0.732±0.20 12.620±15.08 6.988±1.03 1.683±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007T4 CIL_0007T4_0001 VISTA 1:26423129-27024414

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 ISS DNA binding
GO:0005515 IEA protein binding
GO:0005634 ISS nucleus
GO:0005719 ISS nuclear euchromatin
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007049 IEA cell cycle
GO:0021696 ISS cerebellar cortex morphogenesis
GO:0042127 ISS regulation of cell proliferation
GO:0051726 ISS regulation of cell cycle
GO:0061351 ISS neural precursor cell proliferation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000125541 Trnp1-001 protein_coding Mus_musculus 0 704

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