C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: collagen, type IV, alpha 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000125563 Col4a3-002 ENSMUSG00000079465 10090 + 1:82715304-82718884 nonsense_mediated_decay

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004AI CIL_0004AI_0003 CGP 1:82448423-82722059
CIL_0006XR CIL_0006XR_0002 CGP 1:82586921-82752394

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005201 IEA extracellular matrix structural constituent
GO:0005587 IDA collagen type IV trimer
GO:0005604 IDA basement membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000396578 COL4A3-001 protein_coding Homo_sapiens 0 444
ENST00000469504 COL4A3-002 processed_transcript Homo_sapiens 0 584

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