C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004AI_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000002831-ENSDARG00000003395 CGP 7955 15:35219728-35380634
GeneTranscriptPositionBiotype
ENSDARG00000002831 (col4a4)
collagen, type IV, alpha 4 		ENSDART00000061186 (col4a4-201) 35220525-35321417 protein_coding
ENSDART00000154476 (col4a4-001) 35219728-35323241 protein_coding
ENSDARG00000003395 (col4a3)
collagen, type IV, alpha 3 		ENSDART00000049849 (col4a3-201) 35323158-35380622 protein_coding
ENSDART00000156697 (col4a3-001) 35322704-35380634 protein_coding
ENSDARG00000097433 (si:dkeyp-110b2.2)
si:dkeyp-110b2.2 		ENSDART00000155931 (si:dkeyp-110b2.2-001) 35219741-35228170 antisense
ENSDART00000157085 (si:dkeyp-110b2.2-002) 35220421-35230812 antisense
CIL_0004AI_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000081052-ENSG00000169031 CGP 9606 2:227002711-227314792
GeneTranscriptPositionBiotype
ENSG00000081052 (COL4A4)
collagen, type IV, alpha 4 		ENST00000396625 (COL4A4-001) 227002711-227164113 protein_coding
CIL_0004AI_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000067158-ENSMUSG00000079465 CGP 10090 1:82448423-82722059
GeneTranscriptPositionBiotype
ENSMUSG00000067158 (Col4a4)
collagen, type IV, alpha 4 		ENSMUST00000087050 (Col4a4-001) 82448423-82586849 protein_coding
ENSMUST00000135271 (Col4a4-002) 82538527-82586792 retained_intron
ENSMUSG00000079465 (Col4a3)
collagen, type IV, alpha 3 		ENSMUST00000113457 (Col4a3-001) 82586976-82722059 protein_coding
ENSMUST00000125563 (Col4a3-002) 82715304-82718884 nonsense_mediated_decay
ENSMUST00000141994 (Col4a3-004) 82586921-82642853 retained_intron
ENSMUST00000152664 (Col4a3-003) 82715304-82718982 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004AI_0001ENSDARG00000002831ENSDART00000061186ENSDART00000154476ENSDARG00000003395ENSDART00000049849ENSDART00000156697ENSDARG00000097433ENSDART00000155931ENSDART00000157085CIL_0004AI_0002ENSG00000081052ENST00000396625CIL_0004AI_0003ENSMUSG00000067158ENSMUST00000087050ENSMUST00000135271ENSMUSG00000079465ENSMUST00000113457ENSMUST00000125563ENSMUST00000141994ENSMUST00000152664
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004AI_0001ENSDARG00000002831ENSDART00000061186ENSDART00000154476ENSDARG00000003395ENSDART00000049849ENSDARG00000097433ENSDART00000155931ENSDART00000157085CIL_0004AI_0002ENSG00000081052ENST00000396625CIL_0004AI_0003ENSMUSG00000067158ENSMUST00000087050ENSMUST00000135271ENSMUSG00000079465ENSMUST00000113457
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000002831 ENSDART00000061186 N/A N/A N/A 0.132±0.04 N/A N/A 0.200±0.10 0.703±0.03 0.058±0.00 N/A N/A N/A N/A N/A
ENSDART00000154476 N/A N/A N/A 0.042±0.02 N/A N/A N/A 0.100±0.00 N/A N/A 0.046±0.00 N/A N/A N/A
ENSDARG00000003395 ENSDART00000049849 N/A N/A N/A 0.029±0.00 N/A N/A 0.078±0.03 0.761±0.29 0.019±0.00 N/A 0.044±0.00 N/A N/A N/A
ENSDART00000156697 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000097433 ENSDART00000155931 N/A N/A N/A N/A N/A N/A 0.341±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000157085 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.170±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000081052 ENST00000396625 0.057±0.00 0.993±0.00 2.887±0.00 0.117±0.04 0.127±0.00 0.235±0.12 1.055±0.32 2.934±2.73 0.202±0.06 0.947±0.53 0.333±0.00 0.518±0.33 0.339±0.16 0.762±0.17
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000067158 ENSMUST00000087050 0.847±0.46 1.255±0.52 0.444±0.18 0.069±0.04 0.332±0.13 0.124±0.01 0.687±0.19 18.219±2.06 0.059±0.03 13.906±2.43 0.241±0.07 5.005±1.55 0.313±0.42 2.539±0.77
ENSMUST00000135271 N/A 2.713±0.91 N/A N/A N/A N/A N/A N/A 0.263±0.00 N/A N/A N/A N/A N/A
ENSMUSG00000079465 ENSMUST00000113457 1.441±0.02 N/A N/A N/A N/A N/A N/A 28.320±1.86 N/A 24.901±0.75 N/A 1.499±0.55 N/A 2.655±0.29
ENSMUST00000125563 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141994 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152664 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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