C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000128073 Atp5a1-004 ENSMUSG00000025428 10090 + 18:77778955-77781099 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonHeartKidneyLiverLungOvaryTestisENSMUST00000128073
Transcript ID Adrenal Breast Colon Heart Kidney Liver Lung Ovary Testis
ENSMUST00000128073 560.465±152.48 350.076±123.21 510.693±191.54 1072.220±18.98 374.988±0.00 331.198±90.42 75.776±0.00 363.010±115.11 65.735±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001P6 CIL_0001P6_0002 CGP 18:77757567-77782869

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000282050 ATP5A1-201 protein_coding Homo_sapiens 0 813
ENST00000398752 ATP5A1-001 protein_coding Homo_sapiens 0 813
ENST00000423669 ATP5A1P8-001 processed_pseudogene Homo_sapiens 0 680
ENST00000453978 ATP5A1P7-001 processed_pseudogene Homo_sapiens 0 675
ENST00000454088 ATP5A1P6-001 processed_pseudogene Homo_sapiens 0 676
ENST00000586523 ATP5A1-013 retained_intron Homo_sapiens 0 348
ENST00000586592 ATP5A1-008 nonsense_mediated_decay Homo_sapiens 0 813
ENST00000587902 ATP5A1-007 retained_intron Homo_sapiens 4e-34 148
ENST00000590156 ATP5A1-002 nonsense_mediated_decay Homo_sapiens 0 813
ENST00000590665 ATP5A1-009 protein_coding Homo_sapiens 0 813
ENST00000592364 ATP5A1-021 nonsense_mediated_decay Homo_sapiens 0 239
ENST00000593152 ATP5A1-202 protein_coding Homo_sapiens 0 813
ENST00000622403 ATP5A1P10-001 processed_pseudogene Homo_sapiens 0 682

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