C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: C-type lectin domain family 5, member a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000129948 Clec5a-001 ENSMUSG00000029915 10090 - 6:40577850-40585795 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000129948
Transcript ID Adipose Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000129948 0.317±0.07 0.360±0.17 0.089±0.05 0.647±0.13 0.117±0.02 0.124±0.08 1.446±0.60 0.413±0.18 0.079±0.01 0.170±0.00 0.155±0.08 0.100±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003A2 CIL_0003A2_0002 CGP 6:40571357-40585821
CIL_0003A5 CIL_0003A5_0002 CGP 6:40574894-40613310

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001618 IDA virus receptor activity
GO:0002076 IDA osteoblast development
GO:0005515 IPI protein binding
GO:0005886 IEA plasma membrane
GO:0009615 IDA response to virus
GO:0009986 IDA cell surface
GO:0016021 IEA integral component of membrane
GO:0030099 IGI myeloid cell differentiation
GO:0030246 IEA carbohydrate binding
GO:0033033 IDA negative regulation of myeloid cell apoptotic process
GO:0043066 IDA negative regulation of apoptotic process
GO:0045087 IDA innate immune response
GO:0050715 IMP positive regulation of cytokine secretion

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000418498 CLEC5A-002 nonsense_mediated_decay Homo_sapiens 0 209
ENST00000438351 CLEC5A-006 protein_coding Homo_sapiens 0 226
ENST00000439991 CLEC5A-004 protein_coding Homo_sapiens 0 209
ENST00000470595 CLEC5A-005 processed_transcript Homo_sapiens 3e-19 99
ENST00000497554 MGAM-003 processed_transcript Homo_sapiens 6e-18 95
ENST00000546910 CLEC5A-001 protein_coding Homo_sapiens 0 431
ENST00000551012 CLEC5A-003 protein_coding Homo_sapiens 0 339

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