C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RCC1 domain containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000130888 Rccd1-005 ENSMUSG00000038930 10090 - 7:80316864-80320097 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastKidneyLiverOvaryPlacentaTestisENSMUST00000130888
Transcript ID Bladder Brain Breast Kidney Liver Ovary Placenta Testis
ENSMUST00000130888 2.266±0.25 2.682±0.54 2.007±0.62 0.523±0.00 0.665±0.00 2.422±0.02 0.615±0.08 0.517±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008AY CIL_0008AY_0002 VISTA 7:80145068-80746500

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000394258 RCCD1-001 protein_coding Homo_sapiens 0 377
ENST00000555155 RCCD1-006 protein_coding Homo_sapiens 0 361
ENST00000555737 RCCD1-003 retained_intron Homo_sapiens 0 220
ENST00000556333 RCCD1-005 nonsense_mediated_decay Homo_sapiens 0 377
ENST00000556618 RCCD1-004 protein_coding Homo_sapiens 0 377
ENST00000556774 RCCD1-009 processed_transcript Homo_sapiens 9e-20 99
ENST00000557266 RCCD1-002 retained_intron Homo_sapiens 0 377
ENST00000557750 RCCD1-008 retained_intron Homo_sapiens 1e-24 119

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