C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RCC1 domain containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000038930 Rccd1 10090 - 7:80316596-80324454 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000047362 Rccd1-001 80316636-80324424 protein_coding
  ENSMUST00000121882 Rccd1-003 80316596-80324444 protein_coding
  ENSMUST00000123109 Rccd1-004 80316641-80324125 retained_intron
  ENSMUST00000123189 Rccd1-008 80320915-80324120 protein_coding
  ENSMUST00000130888 Rccd1-005 80316864-80320097 retained_intron
  ENSMUST00000134288 Rccd1-007 80321227-80324153 retained_intron
  ENSMUST00000144685 Rccd1-009 80316745-80319203 retained_intron
  ENSMUST00000148001 Rccd1-002 80316743-80324454 retained_intron
  ENSMUST00000155124 Rccd1-006 80323773-80324401 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000047362ENSMUST00000121882ENSMUST00000123109ENSMUST00000130888ENSMUST00000134288ENSMUST00000144685ENSMUST00000148001
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000047362 N/A N/A 1.486±0.10 N/A N/A N/A 0.647±0.01 0.367±0.17 0.583±0.22 N/A 0.823±0.00 N/A 0.564±0.27 N/A
ENSMUST00000121882 N/A 1.026±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000123109 2.478±1.46 2.150±0.39 2.723±0.48 4.606±1.38 1.707±0.31 1.993±0.60 0.819±0.16 0.497±0.13 1.410±0.54 1.637±0.38 1.143±0.20 3.093±1.29 1.461±0.63 1.133±0.27
ENSMUST00000130888 N/A N/A 2.266±0.25 2.682±0.54 2.007±0.62 N/A N/A 0.523±0.00 0.665±0.00 N/A N/A 2.422±0.02 0.615±0.08 0.517±0.00
ENSMUST00000134288 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.659±0.54 N/A
ENSMUST00000144685 N/A N/A N/A 10.391±0.00 N/A N/A N/A N/A N/A N/A 1.034±0.00 6.529±1.27 3.365±1.28 N/A
ENSMUST00000148001 2.986±1.28 2.387±0.78 2.845±0.45 2.826±0.71 2.259±0.84 1.240±0.42 0.922±0.16 0.779±0.38 0.746±0.33 2.034±0.14 0.876±0.27 2.831±1.25 0.658±0.05 0.943±0.26

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008AY CIL_0008AY_0002 VISTA 7:80145068-80746500

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005737 IEA cytoplasm
GO:0005886 IEA plasma membrane
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000071074 rccd1 RCC1 domain containing 1 protein_coding Danio_rerio
ENSDARG00000086964 rccd1 RCC1 domain containing 1 protein_coding Danio_rerio
ENSG00000166965 RCCD1 RCC1 domain containing 1 protein_coding Homo_sapiens

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