C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted pseudogene 5540
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000131852 Gm5540-001 ENSMUSG00000048916 10090 + 3:65393337-65395184 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000131852
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000131852 0.970±0.19 0.792±0.13 0.152±0.02 0.054±0.04 0.484±0.16 0.597±0.14 0.223±0.10 0.177±0.07 0.280±0.31 0.328±0.09 0.040±0.02 0.941±0.66 0.055±0.02 0.214±0.10

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000300441 ACSF2-001 protein_coding Homo_sapiens 0 1613
ENST00000427954 ACSF2-002 protein_coding Homo_sapiens 0 1581
ENST00000502667 ACSF2-005 protein_coding Homo_sapiens 0 1286
ENST00000503387 ACSF2-018 retained_intron Homo_sapiens 4e-29 132
ENST00000503408 ACSF2-008 nonsense_mediated_decay Homo_sapiens 3e-36 156
ENST00000504392 ACSF2-004 protein_coding Homo_sapiens 0 1315
ENST00000506052 ACSF2-023 retained_intron Homo_sapiens 9e-37 158
ENST00000506085 ACSF2-007 processed_transcript Homo_sapiens 2e-28 130
ENST00000506582 ACSF2-010 protein_coding Homo_sapiens 0 219
ENST00000507769 ACSF2-014 retained_intron Homo_sapiens 5e-29 132
ENST00000508245 ACSF2-012 nonsense_mediated_decay Homo_sapiens 0 416
ENST00000508734 ACSF2-017 processed_transcript Homo_sapiens 0.00000005 60
ENST00000509806 ACSF2-015 processed_transcript Homo_sapiens 0.000000000000004 86
ENST00000510262 ACSF2-013 nonsense_mediated_decay Homo_sapiens 2e-31 139
ENST00000510410 ACSF2-003 nonsense_mediated_decay Homo_sapiens 0 1315
ENST00000511288 ACSF2-006 retained_intron Homo_sapiens 7e-29 132
ENST00000512119 ACSF2-019 processed_transcript Homo_sapiens 0 440
ENST00000512537 ACSF2-020 retained_intron Homo_sapiens 0 361
ENST00000513101 ACSF2-011 retained_intron Homo_sapiens 0 468
ENST00000513544 ACSF2-016 processed_transcript Homo_sapiens 1e-28 130
ENST00000570356 ACSF2-025 retained_intron Homo_sapiens 0 274

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