C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PRP6 pre-mRNA splicing factor 6 homolog (yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000136481 Prpf6-001 ENSMUSG00000002455 10090 + 2:181601316-181655651 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000136481
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000136481 9.385±0.65 7.811±1.53 15.554±0.76 25.764±9.48 9.201±1.66 9.115±1.15 6.898±0.76 10.190±0.88 11.694±3.23 12.341±1.55 10.749±0.82 22.926±16.50 29.997±9.09 14.683±7.67

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004F5 CIL_0004F5_0002 CGP 2:181569149-181592803

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000398 IEA mRNA splicing, via spliceosome
GO:0003713 ISO transcription coactivator activity
GO:0005634 ISO nucleus
GO:0045944 ISO positive regulation of transcription from RNA polymerase II promoter
GO:0050681 ISO androgen receptor binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000266079 PRPF6-001 protein_coding Homo_sapiens 0 3458

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