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C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
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| Description: | RNA binding motif protein 39 | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENSMUST00000137297  |
Rbm39-014 |
ENSMUSG00000027620 |
10090 | - |
2:156172954-156177901  |
retained_intron |
|
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Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_0008EI | CIL_0008EI_0002 | VISTA | 2:155562263-156164147 |
| CIL_0000WY | CIL_0000WY_0002 | CGP | 2:156144039-156180238 |
| CIL_0000X2 | CIL_0000X2_0002 | CGP | 2:156147239-156309952 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| No GO terms available. | ||
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENST00000412738
|
RBM39-017 | nonsense_mediated_decay | Homo_sapiens | 0 | 302 |
|
ENST00000416529
|
RBM39-024 | nonsense_mediated_decay | Homo_sapiens | 0 | 279 |
|
ENST00000429968
|
RBM39-005 | nonsense_mediated_decay | Homo_sapiens | 0 | 302 |
|
ENST00000433027
|
RBM39-045 | nonsense_mediated_decay | Homo_sapiens | 0 | 217 |
|
ENST00000442447
|
RBM39-016 | processed_transcript | Homo_sapiens | 0 | 302 |
|
ENST00000463004
|
RBM39-004 | retained_intron | Homo_sapiens | 0 | 787 |
|
ENST00000463098
|
RBM39-003 | processed_transcript | Homo_sapiens | 0 | 560 |
|
ENST00000477334
|
RBM39-026 | retained_intron | Homo_sapiens | 0 | 276 |
|
ENST00000481037
|
RBM39-022 | retained_intron | Homo_sapiens | 0 | 409 |
|
ENST00000487604
|
RBM39-025 | processed_transcript | Homo_sapiens | 0 | 538 |
