C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000WY_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000125995-ENSG00000131051 CGP 9606 20:35699272-35742312
GeneTranscriptPositionBiotype
ENSG00000131051 (RBM39)
RNA binding motif protein 39 		ENST00000253363 (RBM39-002) 35703610-35741951 protein_coding
ENST00000338163 (RBM39-008) 35703611-35742221 nonsense_mediated_decay
ENST00000361162 (RBM39-001) 35703610-35742312 protein_coding
ENST00000374038 (RBM39-020) 35721867-35742258 protein_coding
ENST00000397370 (RBM39-013) 35734876-35742232 protein_coding
ENST00000403542 (RBM39-006) 35703611-35742274 nonsense_mediated_decay
ENST00000412738 (RBM39-017) 35724570-35742113 nonsense_mediated_decay
ENST00000416108 (RBM39-043) 35729472-35741626 nonsense_mediated_decay
ENST00000416529 (RBM39-024) 35734796-35741979 nonsense_mediated_decay
ENST00000425184 (RBM39-021) 35725065-35740597 nonsense_mediated_decay
ENST00000426951 (RBM39-039) 35731360-35740837 protein_coding
ENST00000429968 (RBM39-005) 35704326-35742256 nonsense_mediated_decay
ENST00000433027 (RBM39-045) 35732045-35742219 nonsense_mediated_decay
ENST00000434927 (RBM39-018) 35724676-35741609 protein_coding
ENST00000442447 (RBM39-016) 35731916-35742178 processed_transcript
ENST00000444878 (RBM39-007) 35704326-35742248 nonsense_mediated_decay
ENST00000448303 (RBM39-035) 35704703-35729344 protein_coding
ENST00000449489 (RBM39-044) 35731946-35740887 nonsense_mediated_decay
ENST00000453310 (RBM39-012) 35734519-35742258 nonsense_mediated_decay
ENST00000455343 (RBM39-019) 35729322-35741958 nonsense_mediated_decay
ENST00000461283 (RBM39-009) 35703610-35739037 retained_intron
ENST00000461849 (RBM39-014) 35740099-35742238 retained_intron
ENST00000463004 (RBM39-004) 35703609-35742236 retained_intron
ENST00000463098 (RBM39-003) 35739103-35742227 processed_transcript
ENST00000465158 (RBM39-031) 35704405-35713366 retained_intron
ENST00000468086 (RBM39-041) 35708992-35710566 retained_intron
ENST00000470563 (RBM39-027) 35705262-35713415 processed_transcript
ENST00000471635 (RBM39-030) 35708804-35713096 retained_intron
ENST00000475651 (RBM39-028) 35709033-35716787 retained_intron
ENST00000476806 (RBM39-029) 35704326-35714251 nonsense_mediated_decay
ENST00000477334 (RBM39-026) 35731360-35739140 retained_intron
ENST00000481037 (RBM39-022) 35725124-35739283 retained_intron
ENST00000482563 (RBM39-011) 35704377-35707988 retained_intron
ENST00000487604 (RBM39-025) 35732060-35739189 processed_transcript
ENST00000490354 (RBM39-034) 35704400-35705399 retained_intron
ENST00000490484 (RBM39-036) 35713808-35725112 retained_intron
ENST00000492779 (RBM39-010) 35704328-35732806 retained_intron
ENST00000493853 (RBM39-042) 35740458-35741598 retained_intron
ENST00000494274 (RBM39-040) 35713318-35725063 processed_transcript
ENST00000495293 (RBM39-032) 35704326-35713203 retained_intron
ENST00000496183 (RBM39-033) 35704377-35707361 retained_intron
ENST00000498280 (RBM39-037) 35734767-35736641 processed_transcript
ENST00000528062 (RBM39-015) 35703898-35742238 protein_coding
ENST00000615771 (RBM39-047) 35710328-35721839 processed_transcript

Homo sapiens Ensembl (GRCh38)

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CIL_0000WY_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000067847-ENSMUSG00000027620 CGP 10090 2:156144039-156180238
GeneTranscriptPositionBiotype
ENSMUSG00000027618 (Nfs1)
nitrogen fixation gene 1 (S. cerevisiae) 		ENSMUST00000029147 (Nfs1-001) 156123639-156144186 protein_coding
ENSMUST00000109600 (Nfs1-002) 156141787-156144180 protein_coding
ENSMUST00000125449 (Nfs1-003) 156138507-156144153 retained_intron
ENSMUST00000184469 (Nfs1-007) 156123650-156139809 protein_coding
ENSMUSG00000027620 (Rbm39)
RNA binding motif protein 39 		ENSMUST00000029149 (Rbm39-018) 156147249-156180167 protein_coding
ENSMUST00000109584 (Rbm39-022) 156174774-156180238 protein_coding
ENSMUST00000109587 (Rbm39-001) 156147239-156180238 protein_coding
ENSMUST00000126992 (Rbm39-020) 156161829-156180142 protein_coding
ENSMUST00000128243 (Rbm39-012) 156178559-156180212 retained_intron
ENSMUST00000130516 (Rbm39-006) 156163986-156168148 retained_intron
ENSMUST00000131625 (Rbm39-016) 156162813-156169231 processed_transcript
ENSMUST00000132929 (Rbm39-007) 156177161-156180196 retained_intron
ENSMUST00000135274 (Rbm39-017) 156161831-156165212 retained_intron
ENSMUST00000137297 (Rbm39-014) 156172954-156177901 retained_intron
ENSMUST00000137340 (Rbm39-004) 156178561-156180145 retained_intron
ENSMUST00000137566 (Rbm39-009) 156174689-156180156 nonsense_mediated_decay
ENSMUST00000138381 (Rbm39-015) 156167538-156177731 retained_intron
ENSMUST00000140001 (Rbm39-010) 156170040-156177383 processed_transcript
ENSMUST00000142071 (Rbm39-026) 156147249-156180149 nonsense_mediated_decay
ENSMUST00000146288 (Rbm39-021) 156164806-156180159 protein_coding
ENSMUST00000146297 (Rbm39-003) 156147246-156179580 protein_coding
ENSMUST00000146549 (Rbm39-008) 156172833-156180161 nonsense_mediated_decay
ENSMUST00000147098 (Rbm39-013) 156172932-156180147 nonsense_mediated_decay
ENSMUST00000148794 (Rbm39-019) 156149236-156164923 protein_coding
ENSMUST00000150272 (Rbm39-011) 156164920-156172961 processed_transcript
ENSMUST00000152919 (Rbm39-005) 156177361-156180149 nonsense_mediated_decay
ENSMUST00000153514 (Rbm39-025) 156147940-156180184 nonsense_mediated_decay
ENSMUST00000154677 (Rbm39-024) 156174685-156179912 nonsense_mediated_decay
ENSMUST00000155837 (Rbm39-002) 156147940-156180176 nonsense_mediated_decay
ENSMUSG00000067847 (Romo1)
reactive oxygen species modulator 1 		ENSMUST00000088610 (Romo1-001) 156144039-156145797 protein_coding
ENSMUST00000109597 (Romo1-003) 156144233-156145794 protein_coding
ENSMUST00000109598 (Romo1-002) 156144237-156145783 protein_coding
ENSMUST00000119950 (Romo1-004) 156144240-156145794 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000WY_0001ENSG00000131051ENST00000253363ENST00000361162ENST00000374038ENST00000403542ENST00000434927ENST00000444878ENST00000448303ENST00000461283ENST00000463004ENST00000490484ENST00000492779ENST00000496183ENST00000528062ENST00000615771CIL_0000WY_0002ENSMUSG00000027618ENSMUST00000029147ENSMUST00000109600ENSMUSG00000027620ENSMUST00000029149ENSMUST00000109584ENSMUST00000109587ENSMUST00000128243ENSMUST00000132929ENSMUST00000146288ENSMUST00000146297ENSMUST00000148794ENSMUST00000153514ENSMUST00000155837ENSMUSG00000067847ENSMUST00000088610ENSMUST00000109597
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000131051 ENST00000253363 N/A N/A N/A 8.049±0.00 11.602±0.00 N/A 6.256±0.00 N/A 5.610±0.00 15.032±0.00 N/A 18.001±3.47 13.367±3.36 N/A
ENST00000338163 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000361162 N/A N/A 3.566±0.00 5.609±0.00 N/A 5.539±0.00 N/A N/A N/A N/A 4.928±0.00 17.510±0.00 8.117±1.43 N/A
ENST00000374038 43.367±0.00 N/A N/A 28.263±0.00 N/A 34.417±0.00 16.888±0.00 N/A 13.002±0.00 48.162±0.00 N/A N/A 20.704±0.00 N/A
ENST00000397370 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000403542 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.921±0.00 N/A N/A N/A
ENST00000412738 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000416108 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000416529 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000425184 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000426951 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000429968 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000433027 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000434927 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 54.538±0.00 28.026±0.00 31.408±0.00
ENST00000442447 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000444878 N/A 22.803±0.00 N/A N/A N/A N/A N/A N/A 5.004±0.00 20.927±0.00 3.475±0.00 18.539±0.00 15.623±1.70 16.447±0.00
ENST00000448303 N/A N/A N/A N/A N/A 22.276±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000449489 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000453310 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000455343 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000461283 12.273±0.00 28.140±0.00 N/A 14.995±0.00 12.022±0.00 22.797±0.00 6.147±0.00 35.777±0.00 3.957±0.00 12.779±0.00 4.921±0.00 34.039±0.00 N/A 43.016±0.00
ENST00000461849 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000463004 N/A 9.398±0.00 3.340±0.00 N/A 7.492±2.84 N/A 2.580±0.10 7.358±3.65 4.068±2.56 26.871±0.00 1.927±0.00 11.017±5.63 N/A 10.985±0.00
ENST00000463098 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000465158 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468086 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470563 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471635 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475651 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476806 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477334 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000481037 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482563 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487604 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490354 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490484 N/A N/A N/A 37.078±0.00 N/A N/A N/A N/A N/A N/A 10.595±0.00 N/A N/A N/A
ENST00000492779 N/A N/A 3.795±0.00 N/A 15.598±0.00 8.108±0.00 3.794±0.00 7.526±0.00 9.630±0.00 N/A N/A N/A N/A N/A
ENST00000493853 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494274 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495293 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496183 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 12.850±0.00 N/A N/A N/A
ENST00000498280 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000528062 N/A N/A N/A N/A N/A 10.166±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000615771 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 148.454±0.00 61.101±0.00 65.489±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027618 ENSMUST00000029147 38.457±5.08 42.764±1.48 25.462±4.19 19.335±5.64 36.478±3.50 26.417±1.05 47.340±1.67 60.465±4.03 38.458±8.42 26.873±0.56 49.159±1.46 35.248±4.70 26.734±5.36 23.097±6.17
ENSMUST00000109600 N/A 145.816±55.75 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000125449 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000184469 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000027620 ENSMUST00000029149 9.861±1.77 12.612±2.38 20.001±5.44 28.717±3.07 10.699±2.11 7.874±1.94 7.656±1.93 11.094±3.35 20.554±14.12 16.513±1.65 11.912±1.91 7.304±1.72 36.534±8.30 N/A
ENSMUST00000109584 N/A 24.843±12.29 N/A N/A N/A N/A N/A N/A 4.804±0.00 N/A N/A 6.853±0.00 N/A N/A
ENSMUST00000109587 N/A N/A 14.776±1.96 18.016±1.07 N/A N/A N/A N/A 16.213±2.60 N/A 6.734±2.49 N/A 20.259±1.27 N/A
ENSMUST00000126992 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000128243 10.199±0.91 10.653±0.72 N/A N/A 9.868±2.42 9.968±1.00 N/A N/A 4.287±0.00 13.977±0.62 N/A 9.466±2.81 N/A N/A
ENSMUST00000130516 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000131625 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000132929 N/A 32.116±8.97 N/A N/A 21.000±0.25 12.335±2.27 N/A N/A N/A 17.208±3.78 N/A 17.495±3.73 N/A N/A
ENSMUST00000135274 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000137297 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000137340 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000137566 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138381 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140001 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142071 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146288 N/A 22.140±0.00 N/A 118.859±0.00 N/A N/A N/A N/A N/A N/A N/A 323.573±0.00 208.400±80.80 107.768±0.00
ENSMUST00000146297 N/A N/A 13.785±0.00 28.909±0.00 9.975±0.00 N/A N/A N/A N/A N/A N/A 61.396±8.58 31.431±0.00 N/A
ENSMUST00000146549 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147098 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148794 N/A N/A N/A 100.548±0.00 N/A N/A N/A N/A N/A N/A N/A 224.392±0.00 175.949±25.44 48.780±0.00
ENSMUST00000150272 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152919 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153514 N/A 10.871±2.03 N/A N/A 6.569±2.52 8.092±2.22 N/A 4.870±0.00 4.676±0.00 8.626±0.00 N/A 8.257±1.54 27.767±0.00 N/A
ENSMUST00000154677 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155837 8.161±1.12 9.484±1.54 N/A N/A 7.203±0.89 5.874±0.00 4.631±1.34 8.014±1.33 5.144±1.48 11.100±0.41 5.137±0.07 8.606±3.18 35.498±8.23 11.321±7.16
ENSMUSG00000067847 ENSMUST00000088610 157.859±20.81 125.120±8.66 161.809±24.35 160.355±49.35 139.596±3.18 93.634±9.89 174.689±13.13 212.364±36.10 143.401±52.88 112.507±6.74 142.977±12.40 132.312±41.95 146.085±10.83 70.129±15.63
ENSMUST00000109597 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 32.620±0.00 N/A N/A
ENSMUST00000109598 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000119950 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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