C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000140197 Smg6-004 ENSMUSG00000038290 10090 + 11:74993853-75139369 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RP CIL_0007RP_0002 VISTA 11:74746156-75348336
CIL_00093G CIL_00093G_0002 VISTA 11:74749027-75350435

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000263073 SMG6-001 protein_coding Homo_sapiens 0 1018
ENST00000354901 SMG6-002 protein_coding Homo_sapiens 0 1018
ENST00000536871 SMG6-005 protein_coding Homo_sapiens 0 1018
ENST00000570606 SMG6-021 protein_coding Homo_sapiens 0 303
ENST00000570659 SMG6-019 protein_coding Homo_sapiens 0 462
ENST00000570668 SMG6-013 protein_coding Homo_sapiens 0 287
ENST00000570874 SMG6-011 retained_intron Homo_sapiens 0 542
ENST00000571442 SMG6-015 protein_coding Homo_sapiens 0 468
ENST00000572205 SMG6-018 protein_coding Homo_sapiens 0 564
ENST00000572369 SMG6-008 protein_coding Homo_sapiens 0 680
ENST00000573166 SMG6-003 processed_transcript Homo_sapiens 0 315
ENST00000575176 SMG6-009 protein_coding Homo_sapiens 0 601
ENST00000575338 SMG6-007 processed_transcript Homo_sapiens 0 315
ENST00000575454 SMG6-010 protein_coding Homo_sapiens 0 638
ENST00000575663 SMG6-014 protein_coding Homo_sapiens 0 460

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