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C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
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| Description: | SMG6 nonsense mediated mRNA decay factor | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENST00000573166  |
SMG6-003 |
ENSG00000070366 |
9606 | - |
17:2059846-2088761  |
processed_transcript |
|
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Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_00093G | CIL_00093G_0001 | VISTA | 17:1876478-2477942 |
| CIL_0007RP | CIL_0007RP_0001 | VISTA | 17:1878704-2480995 |
| CIL_0007KQ | CIL_0007KQ_0001 | UCNEbase | 17:1996571-2212289 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| No GO terms available. | ||
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENSMUST00000130145
|
Smg6-003 | nonsense_mediated_decay | Mus_musculus | 0 | 1703 |
|
ENSMUST00000045281
|
Smg6-001 | protein_coding | Mus_musculus | 0 | 1703 |
|
ENSMUST00000153226
|
Smg6-006 | processed_transcript | Mus_musculus | 0 | 569 |
|
ENSMUST00000142038
|
Smg6-005 | processed_transcript | Mus_musculus | 0 | 316 |
|
ENSMUST00000140197
|
Smg6-004 | protein_coding | Mus_musculus | 0 | 315 |
