C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Rho GTPase activating protein 23
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000142465 Arhgap23-001 ENSMUSG00000049807 10090 + 11:97452130-97502402 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainMuscleOvaryPlacentaTestisENSMUST00000142465
Transcript ID Brain Muscle Ovary Placenta Testis
ENSMUST00000142465 7.645±8.16 0.631±0.04 5.954±0.97 17.067±2.59 1.059±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000SJ CIL_0000SJ_0002 CGP 11:97362551-97502402

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005096 IEA GTPase activator activity
GO:0005622 IEA intracellular
GO:0007165 IEA signal transduction
GO:0043547 IEA positive regulation of GTPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000562773 ARHGAP23P1-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 2065
ENST00000568208 RP11-1166P10.1-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 508
ENST00000568570 RP11-1166P10.1-002 processed_transcript Homo_sapiens 0 1158
ENST00000568978 RP11-1166P10.1-004 retained_intron Homo_sapiens 0 255
ENST00000569157 RP11-1166P10.1-003 processed_transcript Homo_sapiens 0 446
ENST00000610551 ARHGAP23-201 protein_coding Homo_sapiens 0 3687
ENST00000614693 ARHGAP23-004 protein_coding Homo_sapiens 3e-36 156
ENST00000616909 ARHGAP23-008 protein_coding Homo_sapiens 0 558
ENST00000617798 ARHGAP23-010 retained_intron Homo_sapiens 0 272
ENST00000618325 ARHGAP23-011 retained_intron Homo_sapiens 0 272
ENST00000619156 ARHGAP23-003 nonsense_mediated_decay Homo_sapiens 0 532
ENST00000620325 ARHGAP23-009 nonsense_mediated_decay Homo_sapiens 0 285
ENST00000620329 ARHGAP23-005 protein_coding Homo_sapiens 0 368
ENST00000620417 ARHGAP23-001 protein_coding Homo_sapiens 0 3134
ENST00000621154 RP11-989E6.13-001 unprocessed_pseudogene Homo_sapiens 0 2200
ENST00000622683 ARHGAP23-006 protein_coding Homo_sapiens 0 3687

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