C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000SJ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000274211-ENSG00000275832 CGP 9606 17:38352228-38512392
GeneTranscriptPositionBiotype
ENSG00000274211 (SOCS7)
suppressor of cytokine signaling 7 		ENST00000612932 (SOCS7-001) 38352245-38405593 protein_coding
ENST00000613678 (SOCS7-002) 38352228-38399648 protein_coding
ENST00000617360 (SOCS7-003) 38352551-38399633 retained_intron
ENST00000617765 (SOCS7-004) 38352943-38377738 protein_coding
ENSG00000276170 (AC124789.1)
 ENST00000613481 (AC124789.1-006) 38451306-38452363 retained_intron
ENST00000615582 (AC124789.1-005) 38451056-38451688 antisense
ENST00000617855 (AC124789.1-002) 38450588-38452444 antisense
ENST00000617990 (AC124789.1-001) 38450394-38452399 antisense
ENST00000619955 (AC124789.1-004) 38451161-38451903 retained_intron
ENST00000622796 (AC124789.1-003) 38450626-38451946 antisense

Homo sapiens Ensembl (GRCh38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11
CIL_0000SJ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000038485-ENSMUSG00000049807 CGP 10090 11:97362551-97502402
GeneTranscriptPositionBiotype
ENSMUSG00000038485 (Socs7)
suppressor of cytokine signaling 7 		ENSMUST00000045540 (Socs7-001) 97362551-97398542 protein_coding
ENSMUST00000149212 (Socs7-002) 97377437-97378667 processed_transcript
ENSMUSG00000047988 (4933428G20Rik)
RIKEN cDNA 4933428G20 gene 		ENSMUST00000056955 (4933428G20Rik-001) 97490783-97500340 protein_coding
ENSMUSG00000049807 (Arhgap23)
Rho GTPase activating protein 23 		ENSMUST00000093940 (Arhgap23-002) 97491144-97502398 protein_coding
ENSMUST00000107601 (Arhgap23-201) 97450160-97502400 protein_coding
ENSMUST00000121799 (Arhgap23-003) 97415533-97502402 protein_coding
ENSMUST00000142465 (Arhgap23-001) 97452130-97502402 nonsense_mediated_decay
ENSMUST00000152933 (Arhgap23-004) 97436285-97444228 processed_transcript

Mus musculus Ensembl (GRCm38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000SJ_0001ENSG00000274211ENST00000612932ENST00000613678ENST00000617360ENST00000617765ENSG00000276170ENST00000613481ENST00000615582ENST00000617855ENST00000617990ENST00000619955ENST00000622796CIL_0000SJ_0002ENSMUSG00000038485ENSMUST00000045540ENSMUST00000149212ENSMUSG00000047988ENSMUST00000056955ENSMUSG00000049807ENSMUST00000093940ENSMUST00000107601ENSMUST00000121799ENSMUST00000142465ENSMUST00000152933
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000SJ_0001ENSG00000274211ENST00000612932ENST00000613678ENSG00000276170ENST00000613481ENST00000615582ENST00000617855ENST00000617990ENST00000619955ENST00000622796CIL_0000SJ_0002ENSMUSG00000038485ENSMUST00000045540ENSMUST00000149212ENSMUSG00000047988ENSMUST00000056955ENSMUSG00000049807ENSMUST00000093940ENSMUST00000107601ENSMUST00000121799ENSMUST00000142465
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000274211 ENST00000612932 N/A N/A N/A 3.953±0.03 N/A 1.004±0.00 0.601±0.38 N/A N/A N/A 0.953±0.04 N/A N/A 14.307±3.32
ENST00000613678 N/A N/A N/A N/A 1.489±0.00 N/A N/A N/A 2.765±0.00 1.337±0.00 2.515±0.00 N/A N/A 33.908±11.48
ENST00000617360 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000617765 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000276170 ENST00000613481 N/A N/A N/A N/A N/A N/A 0.073±0.00 N/A N/A 1.278±0.00 N/A 0.559±0.49 6.405±0.00 0.314±0.00
ENST00000615582 N/A N/A N/A N/A 0.170±0.00 N/A 0.306±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000617855 N/A 0.324±0.00 N/A N/A 0.122±0.00 0.306±0.00 N/A N/A N/A 2.968±0.00 N/A N/A 3.461±0.00 N/A
ENST00000617990 0.193±0.00 N/A N/A 0.290±0.00 N/A 0.035±0.00 0.091±0.01 1.139±0.17 N/A 3.098±0.00 0.283±0.00 0.750±0.52 13.198±7.13 N/A
ENST00000619955 N/A N/A N/A 0.322±0.00 0.119±0.00 N/A N/A N/A N/A N/A N/A 0.095±0.00 N/A 0.266±0.00
ENST00000622796 N/A 1.875±0.00 N/A 0.140±0.00 N/A 0.302±0.19 0.193±0.02 N/A N/A 1.121±0.00 N/A 0.421±0.11 10.038±4.35 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000038485 ENSMUST00000045540 1.084±0.78 4.252±1.38 0.797±0.35 9.462±4.59 2.857±1.17 2.707±1.26 1.939±0.70 2.294±0.67 0.526±0.37 3.911±0.59 4.537±0.83 6.586±2.98 1.146±0.40 34.801±13.61
ENSMUST00000149212 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 125.413±0.00
ENSMUSG00000047988 ENSMUST00000056955 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 15.104±1.75
ENSMUSG00000049807 ENSMUST00000093940 8.656±3.82 14.262±7.90 5.570±1.06 2.205±0.00 5.426±0.86 2.470±0.81 2.270±0.46 1.683±0.26 6.466±4.08 12.630±0.44 0.993±0.12 7.755±3.24 4.168±1.12 N/A
ENSMUST00000107601 2.483±0.23 4.896±0.75 4.134±0.82 7.900±2.74 4.301±2.44 1.415±0.57 0.722±0.00 1.164±0.40 2.075±1.33 6.924±0.87 0.313±0.06 3.596±1.27 1.137±0.07 N/A
ENSMUST00000121799 7.069±1.43 5.060±0.75 3.842±0.66 3.663±1.60 3.280±1.09 1.281±0.43 2.235±0.43 2.488±1.05 3.446±3.06 4.467±1.14 1.185±0.62 5.498±2.07 4.653±2.06 5.591±2.33
ENSMUST00000142465 N/A N/A N/A 7.645±8.16 N/A N/A N/A N/A N/A N/A 0.631±0.04 5.954±0.97 17.067±2.59 1.059±0.00
ENSMUST00000152933 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Loading