C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RCC1 domain containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000148001 Rccd1-002 ENSMUSG00000038930 10090 - 7:80316743-80324454 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000148001
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000148001 2.986±1.28 2.387±0.78 2.845±0.45 2.826±0.71 2.259±0.84 1.240±0.42 0.922±0.16 0.779±0.38 0.746±0.33 2.034±0.14 0.876±0.27 2.831±1.25 0.658±0.05 0.943±0.26

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008AY CIL_0008AY_0002 VISTA 7:80145068-80746500

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000394258 RCCD1-001 protein_coding Homo_sapiens 0 357
ENST00000555155 RCCD1-006 protein_coding Homo_sapiens 0 357
ENST00000555737 RCCD1-003 retained_intron Homo_sapiens 0 359
ENST00000556333 RCCD1-005 nonsense_mediated_decay Homo_sapiens 0 220
ENST00000556618 RCCD1-004 protein_coding Homo_sapiens 0 357
ENST00000556774 RCCD1-009 processed_transcript Homo_sapiens 3e-19 97
ENST00000557266 RCCD1-002 retained_intron Homo_sapiens 0 359
ENST00000557750 RCCD1-008 retained_intron Homo_sapiens 5e-18 97

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