C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: retrotransposon-like 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000149046 Rtl1-201 ENSMUSG00000085925 10090 - 12:109589194-109600330 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000149046
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000149046 0.391±0.12 1.871±0.23 0.351±0.16 4.570±2.11 0.612±0.30 0.467±0.09 0.164±0.02 0.040±0.02 2.372±3.50 0.122±0.02 0.022±0.01 2.465±1.66 6.182±3.67 0.105±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007Q7 CIL_0007Q7_0002 VISTA 12:109207924-109810969
CIL_00032N CIL_00032N_0002 CGP 12:109452823-109600330
CIL_0004AB CIL_0004AB_0002 CGP 12:109589194-110281097

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0007275 IEA multicellular organismal development
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000395064 ZBTB9-001 protein_coding Homo_sapiens 0.000001 60
ENST00000414934 ZBTB9-001 protein_coding Homo_sapiens 0.000001 60
ENST00000534062 RTL1-001 protein_coding Homo_sapiens 0 1736
ENST00000612407 ZBTB9-004 protein_coding Homo_sapiens 0.0000003 60

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