C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: retrotransposon-like 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000534062 RTL1-001 ENSG00000254656 9606 - 14:100880655-100884847 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000534062
Transcript ID Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000534062 0.006±0.00 0.345±0.25 0.139±0.13 0.157±0.12 0.084±0.00 0.118±0.08 0.183±0.00 0.070±0.00 0.725±0.67 2.305±0.84 0.283±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007Q7 CIL_0007Q7_0001 VISTA 14:100481347-101081347
CIL_00032N CIL_00032N_0001 CGP 14:100725705-100884847
CIL_0004AB CIL_0004AB_0001 CGP 14:100880655-101563452

Gene Ontology

GO IDEvidence TypeGO Description
GO:0007275 IEA multicellular organismal development
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000184423 RTL1-201 protein_coding Mus_musculus 0 1736
ENSMUST00000149046 Rtl1-201 protein_coding Mus_musculus 0 1736

Loading