C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lectin, galactose binding, soluble 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000150290 Lgals3-002 ENSMUSG00000050335 10090 + 14:47373899-47385799 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000150290
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000150290 99.733±38.75 32.015±2.96 148.680±6.72 0.629±0.38 93.448±44.63 1407.803±88.03 6.371±2.00 34.763±3.27 12.004±9.23 117.105±15.11 3.619±1.33 67.034±13.91 409.835±279.05 1.619±1.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004RO CIL_0004RO_0002 CGP 14:47298314-47386160
CIL_0000HY CIL_0000HY_0002 CGP 14:47367751-47418407

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001501 IGI skeletal system development
GO:0005515 IPI protein binding
GO:0005578 IDA proteinaceous extracellular matrix
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0009897 IDA external side of plasma membrane
GO:0030198 IGI extracellular matrix organization
GO:0030246 IEA carbohydrate binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000254301 LGALS3-001 protein_coding Homo_sapiens 0 475
ENST00000553755 LGALS3-007 processed_transcript Homo_sapiens 0 327
ENST00000554715 LGALS3-003 protein_coding Homo_sapiens 0 355
ENST00000556322 LGALS3-004 processed_transcript Homo_sapiens 0 248
ENST00000556438 LGALS3-002 retained_intron Homo_sapiens 0 449

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