C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: oculocutaneous albinism II
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000152693 Oca2-002 ENSMUSG00000030450 10090 + 7:56239777-56536265 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastHeartKidneyOvaryPlacentaTestisENSMUST00000152693
Transcript ID Bladder Brain Breast Heart Kidney Ovary Placenta Testis
ENSMUST00000152693 0.006±0.00 0.112±0.04 0.032±0.00 0.011±0.00 0.024±0.00 1.669±0.99 0.002±0.00 0.177±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006LG CIL_0006LG_0002 CGP 7:56050155-56536517

Gene Ontology

GO IDEvidence TypeGO Description
GO:0007286 IMP spermatid development
GO:0008283 IMP cell proliferation
GO:0030318 IMP melanocyte differentiation
GO:0042438 IMP melanin biosynthetic process
GO:0043473 IMP pigmentation
GO:0048066 IMP developmental pigmentation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000353809 OCA2-002 protein_coding Homo_sapiens 0 1559
ENST00000354638 OCA2-001 protein_coding Homo_sapiens 0 1624
ENST00000619392 AC243653.2-201 protein_coding Homo_sapiens 0 268

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