C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 6493
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000159889 Gm6493-001 ENSMUSG00000090021 10090 - 16:23014208-23017038 unprocessed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000159889
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000159889 0.291±0.10 0.094±0.03 0.022±0.01 0.049±0.04 0.182±0.01 0.181±0.04 0.091±0.05 0.394±0.13 0.142±0.08 0.190±0.10 0.366±0.21 0.062±0.03 0.267±0.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008LA CIL_0008LA_0002 VISTA 16:22937415-23544553
CIL_000043 CIL_000043_0002 CGP 16:22951072-23029101

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000051278 tnpo1-201 protein_coding Danio_rerio 0 1079
ENST00000337273 TNPO1-001 protein_coding Homo_sapiens 0 2071
ENST00000423641 TNPO1P1-001 processed_pseudogene Homo_sapiens 0 1254
ENST00000426249 TNPO1P2-001 processed_pseudogene Homo_sapiens 0 1772
ENST00000436471 TNPO1P3-001 processed_pseudogene Homo_sapiens 0 1801
ENST00000503084 TNPO1-005 retained_intron Homo_sapiens 0 462
ENST00000506351 TNPO1-006 protein_coding Homo_sapiens 0 2071
ENST00000506528 TNPO1-008 processed_transcript Homo_sapiens 0 366
ENST00000509030 TNPO1-007 processed_transcript Homo_sapiens 0 366
ENST00000511754 TNPO1-009 processed_transcript Homo_sapiens 0 241
ENST00000513944 TNPO1-002 processed_transcript Homo_sapiens 0 250
ENST00000515483 TNPO1-010 processed_transcript Homo_sapiens 0 366
ENST00000518279 TNPO1-012 processed_transcript Homo_sapiens 0 213
ENST00000520850 TNPO1-011 nonsense_mediated_decay Homo_sapiens 0 366
ENST00000523768 TNPO1-013 protein_coding Homo_sapiens 0 2071
ENST00000605210 TNPO1-014 protein_coding Homo_sapiens 0 907

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