C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: thioredoxin domain containing 9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000162031 Txndc9-201 ENSMUSG00000058407 10090 - 1:37983867-37997208 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000162031
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000162031 2.382±0.69 2.316±0.55 3.471±0.50 7.705±2.99 1.339±0.58 3.139±0.70 1.951±0.14 3.244±0.73 4.372±2.75 2.566±0.86 1.455±0.15 3.295±2.11 6.736±2.10 4.480±0.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000349 CIL_000349_0002 CGP 1:37946736-37997208
CIL_000348 CIL_000348_0002 CGP 1:37983867-38055579

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005813 IDA centrosome
GO:0008150 ND biological_process
GO:0030496 IDA midbody
GO:0045454 IEA cell redox homeostasis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000264255 TXNDC9-001 protein_coding Homo_sapiens 0 730
ENST00000409434 TXNDC9-002 protein_coding Homo_sapiens 0 549
ENST00000409705 TXNDC9-004 protein_coding Homo_sapiens 0 388
ENST00000422767 TXNDC9-009 nonsense_mediated_decay Homo_sapiens 0 453
ENST00000438680 TXNDC9-008 nonsense_mediated_decay Homo_sapiens 0 411
ENST00000463385 TXNDC9-003 retained_intron Homo_sapiens 0 411
ENST00000514020 RP11-533F5.2-001 processed_pseudogene Homo_sapiens 0 520

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