C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: selectin, platelet
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000162746 Selp-001 ENSMUSG00000026580 10090 + 1:164115264-164150026 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartLungMuscleOvaryPlacentaENSMUST00000162746
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Lung Muscle Ovary Placenta
ENSMUST00000162746 2.032±0.34 0.136±0.05 2.096±0.20 1.566±0.27 0.289±0.05 0.241±0.05 1.135±0.10 0.279±0.07 0.882±0.25 0.342±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00093H CIL_00093H_0002 VISTA 1:163597221-164199818

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001530 IEA lipopolysaccharide binding
GO:0001948 IDA glycoprotein binding
GO:0002687 IGI positive regulation of leukocyte migration
GO:0005515 IPI protein binding
GO:0005615 IEA extracellular space
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006954 IMP inflammatory response
GO:0007157 IMP heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules
GO:0007159 IMP leukocyte cell-cell adhesion
GO:0008201 IEA heparin binding
GO:0009897 IDA external side of plasma membrane
GO:0010572 IMP positive regulation of platelet activation
GO:0014068 ISS positive regulation of phosphatidylinositol 3-kinase signaling
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane
GO:0031092 IEA platelet alpha granule membrane
GO:0033623 ISS regulation of integrin activation
GO:0033691 IDA sialic acid binding
GO:0042806 IEA fucose binding
GO:0048306 IDA calcium-dependent protein binding
GO:0050900 IMP leukocyte migration
GO:0050901 IMP leukocyte tethering or rolling
GO:0070492 IEA oligosaccharide binding
GO:0071354 ISO cellular response to interleukin-6

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000263686 SELP-001 protein_coding Homo_sapiens 0 544
ENST00000367786 SELP-005 protein_coding Homo_sapiens 0 544
ENST00000367788 SELP-006 protein_coding Homo_sapiens 0 1568
ENST00000367795 SELP-008 protein_coding Homo_sapiens 0 544
ENST00000426706 SELP-002 protein_coding Homo_sapiens 0 544
ENST00000458599 SELP-004 protein_coding Homo_sapiens 0 544

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