C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: etoposide induced 2.4 mRNA
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000163192 Ei24-002 ENSMUSG00000062762 10090 - 9:36779159-36797273 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainColonLiverLungMuscleOvaryPlacentaENSMUST00000163192
Transcript ID Adrenal Brain Colon Liver Lung Muscle Ovary Placenta
ENSMUST00000163192 9.829±3.52 6.226±0.00 4.222±0.55 2.548±0.49 5.420±0.36 5.149±0.23 4.922±1.40 3.171±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000559 CIL_000559_0002 CGP 9:36729344-36797361
CIL_00080D CIL_00080D_0002 VISTA 9:36753339-37355278

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005634 IEA nucleus
GO:0005783 IEA endoplasmic reticulum
GO:0006914 IMP autophagy
GO:0008630 IDA intrinsic apoptotic signaling pathway in response to DNA damage
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0030308 ISS negative regulation of cell growth
GO:0042493 IMP response to drug
GO:0050885 IMP neuromuscular process controlling balance
GO:2001244 IMP positive regulation of intrinsic apoptotic signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000278903 EI24-002 protein_coding Homo_sapiens 0 1585
ENST00000397776 EI24P2-001 processed_pseudogene Homo_sapiens 0 1288
ENST00000416584 EI24P1-001 processed_pseudogene Homo_sapiens 0 289
ENST00000524723 EI24-011 protein_coding Homo_sapiens 0 505
ENST00000527131 EI24-008 protein_coding Homo_sapiens 0 584
ENST00000527235 EI24-018 protein_coding Homo_sapiens 0 1018
ENST00000527520 EI24-013 protein_coding Homo_sapiens 0 342
ENST00000527842 EI24-009 protein_coding Homo_sapiens 0 861
ENST00000529765 EI24-014 retained_intron Homo_sapiens 0 505
ENST00000529812 EI24-007 protein_coding Homo_sapiens 1e-19 100
ENST00000530540 EI24-017 retained_intron Homo_sapiens 0 246
ENST00000531636 EI24-005 nonsense_mediated_decay Homo_sapiens 0 1040
ENST00000534546 EI24-006 protein_coding Homo_sapiens 0 1423
ENST00000615917 EI24-003 protein_coding Homo_sapiens 0 1280
ENST00000618552 EI24-004 protein_coding Homo_sapiens 0 1535
ENST00000620753 EI24-001 protein_coding Homo_sapiens 0 1585

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