C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000163605 Ddx11-201 ENSMUSG00000035842 10090 + 17:66123520-66152167 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000163605
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000163605 0.795±0.64 0.988±0.47 0.223±0.00 1.045±0.79 1.022±0.58 0.699±0.21 0.332±0.24 0.397±0.26 1.985±1.58 0.590±0.27 0.218±0.07 2.203±1.03 1.177±0.52 4.027±0.50

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000RP CIL_0000RP_0002 CGP 17:66111546-66152167

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000790 ISS nuclear chromatin
GO:0000922 ISS spindle pole
GO:0003677 IEA DNA binding
GO:0003690 IEA double-stranded DNA binding
GO:0003697 IEA single-stranded DNA binding
GO:0003723 IEA RNA binding
GO:0004003 IEA ATP-dependent DNA helicase activity
GO:0004386 ISS helicase activity
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0005730 IEA nucleolus
GO:0006200 IEA ATP catabolic process
GO:0007062 ISS sister chromatid cohesion
GO:0008094 ISS DNA-dependent ATPase activity
GO:0030496 ISS midbody
GO:0032508 IEA DNA duplex unwinding
GO:0046872 IEA metal ion binding
GO:0051539 IEA 4 iron, 4 sulfur cluster binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000228264 DDX11-006 protein_coding Homo_sapiens 0 1903
ENST00000350437 DDX11-010 protein_coding Homo_sapiens 0 1367
ENST00000432996 DDX12P-001 unprocessed_pseudogene Homo_sapiens 0 979
ENST00000435753 DDX11-002 nonsense_mediated_decay Homo_sapiens 0 1134
ENST00000438391 DDX11-019 protein_coding Homo_sapiens 0 743
ENST00000536265 DDX11-009 retained_intron Homo_sapiens 0 1426
ENST00000538740 DDX11-027 retained_intron Homo_sapiens 0 202
ENST00000539049 DDX11-008 nonsense_mediated_decay Homo_sapiens 0 1170
ENST00000539757 RP11-22B23.1-001 unprocessed_pseudogene Homo_sapiens 0 1478
ENST00000540935 DDX11-007 nonsense_mediated_decay Homo_sapiens 0 237
ENST00000542129 DDX11-005 nonsense_mediated_decay Homo_sapiens 0 494
ENST00000542838 DDX11-001 protein_coding Homo_sapiens 0 1903
ENST00000543026 DDX11-014 retained_intron Homo_sapiens 0 464
ENST00000545668 DDX11-003 protein_coding Homo_sapiens 0 1893
ENST00000545717 DDX11-022 processed_transcript Homo_sapiens 0 357

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