C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: radial spoke head 10 homolog B (Chlamydomonas)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000166847 Rsph10b-001 ENSMUSG00000075569 10090 + 5:143933062-143985719 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainHeartKidneyLungMuscleOvaryPlacentaTestisENSMUST00000166847
Transcript ID Adrenal Bladder Brain Heart Kidney Lung Muscle Ovary Placenta Testis
ENSMUST00000166847 0.380±0.00 0.648±0.00 1.989±0.01 0.233±0.00 0.273±0.02 2.068±0.50 0.359±0.06 2.015±1.35 0.981±0.00 23.212±14.76

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005AY CIL_0005AY_0002 CGP 5:143909964-143985719
CIL_0002VA CIL_0002VA_0002 CGP 5:143933035-144014853

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000297186 RSPH10B2-201 protein_coding Homo_sapiens 0 893
ENST00000337579 RSPH10B-201 protein_coding Homo_sapiens 0 898
ENST00000403107 RSPH10B2-003 protein_coding Homo_sapiens 0 893
ENST00000404077 RSPH10B2-001 protein_coding Homo_sapiens 0 893
ENST00000404406 RSPH10B-002 protein_coding Homo_sapiens 0 898
ENST00000405415 RSPH10B-001 protein_coding Homo_sapiens 0 898
ENST00000463354 RSPH10B2-010 processed_transcript Homo_sapiens 0 333
ENST00000485129 RSPH10B2-006 processed_transcript Homo_sapiens 0 202
ENST00000485920 RSPH10B2-002 nonsense_mediated_decay Homo_sapiens 0 442
ENST00000489190 RSPH10B2-008 processed_transcript Homo_sapiens 0 196
ENST00000497737 RSPH10B2-009 processed_transcript Homo_sapiens 0 222
ENST00000535104 RSPH10B-007 processed_transcript Homo_sapiens 0 333
ENST00000539630 RSPH10B-008 processed_transcript Homo_sapiens 0 222
ENST00000539903 RSPH10B-202 protein_coding Homo_sapiens 0 446
ENST00000541997 RSPH10B-006 processed_transcript Homo_sapiens 0 196

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