C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002VA_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000169402-ENSG00000146574 CGP 9606 7:6754109-6826770
GeneTranscriptPositionBiotype
ENSG00000146574 (CCZ1B)
CCZ1 vacuolar protein trafficking and biogenesis associated homolog B (S. cerevisiae) 		ENST00000316731 (CCZ1B-001) 6798361-6826770 protein_coding
ENST00000411858 (CCZ1B-008) 6813023-6826243 nonsense_mediated_decay
ENST00000429267 (CCZ1B-014) 6794134-6796942 processed_transcript
ENST00000462378 (CCZ1B-009) 6806004-6812510 retained_intron
ENST00000464543 (CCZ1B-002) 6824038-6826216 retained_intron
ENST00000467004 (CCZ1B-003) 6798941-6807178 retained_intron
ENST00000468078 (CCZ1B-010) 6799195-6801595 retained_intron
ENST00000472464 (CCZ1B-011) 6796836-6801503 processed_transcript
ENST00000481830 (CCZ1B-012) 6796809-6801001 processed_transcript
ENST00000485620 (CCZ1B-007) 6811541-6814828 retained_intron
ENST00000486840 (CCZ1B-004) 6824388-6826272 retained_intron
ENST00000490178 (CCZ1B-006) 6814644-6822429 retained_intron
ENST00000496187 (CCZ1B-005) 6823856-6826205 retained_intron
ENST00000597208 (CCZ1B-013) 6794141-6796936 processed_transcript
ENSG00000169402 (RSPH10B2)
radial spoke head 10 homolog B2 (Chlamydomonas) 		ENST00000297186 (RSPH10B2-201) 6757590-6798765 protein_coding
ENST00000403107 (RSPH10B2-003) 6754109-6798763 protein_coding
ENST00000404077 (RSPH10B2-001) 6754109-6798765 protein_coding
ENST00000418406 (RSPH10B2-005) 6754117-6757854 protein_coding
ENST00000435395 (RSPH10B2-004) 6754117-6757706 protein_coding
ENST00000463354 (RSPH10B2-010) 6761314-6796930 processed_transcript
ENST00000485129 (RSPH10B2-006) 6754124-6776462 processed_transcript
ENST00000485920 (RSPH10B2-002) 6765706-6799365 nonsense_mediated_decay
ENST00000489190 (RSPH10B2-008) 6761295-6773423 processed_transcript
ENST00000493745 (RSPH10B2-011) 6771183-6773414 retained_intron
ENST00000497737 (RSPH10B2-009) 6761437-6768667 processed_transcript

Homo sapiens Ensembl (GRCh38)

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CIL_0002VA_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000075569-ENSMUSG00000029617 CGP 10090 5:143933035-144014853
GeneTranscriptPositionBiotype
ENSMUSG00000029617 (Ccz1)
CCZ1 vacuolar protein trafficking and biogenesis associated 		ENSMUST00000031621 (Ccz1-201) 143987916-144014853 protein_coding
ENSMUSG00000079109 (Pms2)
postmeiotic segregation increased 2 (S. cerevisiae) 		ENSMUST00000110707 (Pms2-005) 143909990-143931442 processed_transcript
ENSMUST00000110709 (Pms2-014) 143910057-143931159 protein_coding
ENSMUST00000110710 (Pms2-002) 143909990-143931205 processed_transcript
ENSMUST00000126331 (Pms2-004) 143910025-143926870 retained_intron
ENSMUST00000128153 (Pms2-008) 143910161-143913460 processed_transcript
ENSMUST00000128207 (Pms2-010) 143913318-143913912 retained_intron
ENSMUST00000141942 (Pms2-007) 143909964-143933968 retained_intron
ENSMUST00000147910 (Pms2-009) 143909999-143917658 processed_transcript
ENSMUST00000148011 (Pms2-001) 143909964-143933968 protein_coding
ENSMUST00000154781 (Pms2-006) 143910025-143914291 retained_intron
ENSMUST00000164999 (Pms2-013) 143919579-143925479 protein_coding
ENSMUST00000168085 (Pms2-012) 143910004-143914754 processed_transcript
ENSMUST00000170083 (Pms2-003) 143909964-143933968 processed_transcript
ENSMUST00000172367 (Pms2-011) 143928175-143937309 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002VA_0001ENSG00000146574ENST00000316731ENST00000411858ENST00000429267ENST00000462378ENST00000464543ENST00000467004ENST00000468078ENST00000472464ENST00000481830ENST00000485620ENST00000486840ENST00000490178ENST00000496187ENST00000597208ENSG00000169402ENST00000297186ENST00000403107ENST00000404077ENST00000418406ENST00000435395ENST00000463354ENST00000485129ENST00000485920ENST00000489190ENST00000493745ENST00000497737CIL_0002VA_0002ENSMUSG00000029617ENSMUST00000031621ENSMUSG00000079109ENSMUST00000110707ENSMUST00000110709ENSMUST00000110710ENSMUST00000126331ENSMUST00000128153ENSMUST00000128207ENSMUST00000141942ENSMUST00000147910ENSMUST00000148011ENSMUST00000154781ENSMUST00000164999ENSMUST00000168085ENSMUST00000170083ENSMUST00000172367
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002VA_0001ENSG00000146574ENST00000316731ENST00000411858ENST00000462378ENST00000464543ENST00000467004ENST00000468078ENST00000485620ENST00000486840ENST00000490178ENST00000496187ENSG00000169402ENST00000297186CIL_0002VA_0002ENSMUSG00000029617ENSMUST00000031621ENSMUSG00000079109ENSMUST00000110707ENSMUST00000110709ENSMUST00000110710ENSMUST00000126331ENSMUST00000141942ENSMUST00000147910ENSMUST00000148011ENSMUST00000164999ENSMUST00000170083
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000146574 ENST00000316731 0.875±0.00 N/A 0.277±0.00 1.071±0.24 0.765±0.10 1.071±0.20 0.223±0.03 0.570±0.06 0.430±0.21 0.656±0.18 0.435±0.23 0.721±0.62 1.407±0.52 0.934±0.01
ENST00000411858 N/A 1.519±0.00 N/A 1.878±0.00 1.080±0.00 N/A 0.569±0.00 1.705±0.00 1.347±0.00 N/A N/A 2.527±0.00 0.930±0.00 3.642±0.00
ENST00000429267 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000462378 N/A 1.703±0.00 2.165±0.00 N/A 3.976±0.00 2.205±0.00 N/A 0.993±0.00 N/A 1.006±0.00 N/A 3.995±0.00 N/A N/A
ENST00000464543 N/A N/A N/A N/A 0.653±0.00 N/A 0.312±0.00 N/A 0.468±0.00 N/A 0.954±0.00 N/A N/A N/A
ENST00000467004 N/A N/A N/A N/A N/A N/A N/A 0.323±0.00 0.120±0.00 0.164±0.00 0.457±0.00 0.444±0.00 N/A N/A
ENST00000468078 N/A 2.780±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000472464 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000481830 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485620 N/A 2.084±0.00 N/A 1.608±0.00 N/A N/A 0.562±0.00 1.240±0.00 N/A N/A N/A 1.764±0.34 N/A N/A
ENST00000486840 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.149±0.00 N/A N/A
ENST00000490178 N/A N/A 2.089±0.00 N/A N/A N/A N/A 0.763±0.00 N/A 2.822±0.00 0.513±0.00 N/A N/A N/A
ENST00000496187 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.692±0.00 N/A N/A
ENST00000597208 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000169402 ENST00000297186 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.909±0.32
ENST00000403107 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000404077 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000418406 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000435395 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000463354 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485129 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485920 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489190 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493745 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497737 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029617 ENSMUST00000031621 8.053±2.19 5.509±5.18 14.805±1.41 18.137±3.74 4.206±2.66 3.426±1.29 4.404±1.54 5.701±2.17 10.391±6.89 5.808±1.69 16.924±0.79 8.531±10.83 27.652±6.29 16.920±8.03
ENSMUSG00000079109 ENSMUST00000110707 1.047±0.52 0.513±0.18 0.939±0.03 1.961±0.28 0.931±0.31 0.957±0.25 0.443±0.01 0.907±0.28 1.688±1.44 1.410±0.17 0.542±0.19 1.581±0.53 3.036±0.90 N/A
ENSMUST00000110709 N/A 0.821±0.00 N/A N/A N/A N/A N/A 0.732±0.00 0.367±0.15 N/A N/A 1.370±0.00 3.192±0.00 N/A
ENSMUST00000110710 0.926±0.33 0.562±0.00 0.981±0.22 2.262±0.42 0.915±0.19 0.682±0.18 0.568±0.17 N/A 1.021±0.65 1.362±0.00 0.591±0.07 1.433±0.51 1.288±0.00 N/A
ENSMUST00000126331 N/A 0.314±0.05 N/A N/A 0.710±0.37 N/A N/A N/A 0.075±0.00 N/A N/A 0.889±0.36 1.403±0.32 N/A
ENSMUST00000128153 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000128207 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141942 0.551±0.29 0.444±0.15 0.417±0.06 0.923±0.16 0.438±0.06 0.318±0.00 0.230±0.05 0.238±0.09 0.782±0.60 0.535±0.05 0.179±0.01 0.779±0.32 0.812±0.27 N/A
ENSMUST00000147910 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.352±0.00 N/A N/A N/A
ENSMUST00000148011 0.319±0.00 N/A 0.699±0.07 0.933±0.08 0.196±0.00 0.380±0.07 0.203±0.00 0.563±0.08 0.833±0.48 N/A 0.311±0.08 0.722±0.00 N/A N/A
ENSMUST00000154781 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000164999 N/A N/A N/A N/A N/A N/A N/A N/A 0.956±0.00 N/A N/A N/A N/A N/A
ENSMUST00000168085 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000170083 N/A N/A N/A 1.001±0.00 N/A N/A N/A N/A 0.083±0.00 N/A 0.154±0.00 N/A 0.332±0.00 N/A
ENSMUST00000172367 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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