C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 8 (sodium/calcium exchanger), member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000168693 Slc8a2-201 ENSMUSG00000030376 10090 + 7:16130300-16160509 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000168693
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000168693 1.912±1.73 1.502±0.17 1.763±0.11 29.624±23.15 0.415±0.16 2.255±0.15 0.186±0.09 0.167±0.03 0.042±0.04 0.418±0.04 0.112±0.02 2.136±0.94 0.103±0.09 15.144±4.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008G1 CIL_0008G1_0002 VISTA 7:16104746-16706411

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005432 IEA calcium:sodium antiporter activity
GO:0006816 IEA calcium ion transport
GO:0007154 IEA cell communication
GO:0016021 IEA integral component of membrane
GO:0035725 IEA sodium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000236877 SLC8A2-001 protein_coding Homo_sapiens 0 3369
ENST00000539381 SLC8A2-004 processed_transcript Homo_sapiens 0 1509
ENST00000542837 SLC8A2-003 protein_coding Homo_sapiens 0 2608
ENST00000597014 SLC8A2-005 protein_coding Homo_sapiens 0 553
ENST00000600576 SLC8A2-008 retained_intron Homo_sapiens 0 647
ENST00000601757 SLC8A2-007 processed_transcript Homo_sapiens 0 481

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